Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DhcVS_1270 |
Symbol | ddpA |
ID | 8658196 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. VS |
Kingdom | Bacteria |
Replicon accession | NC_013552 |
Strand | - |
Start bp | 1167587 |
End bp | 1169215 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | |
Product | ABC-type dipeptide transport system, periplasmic component |
Protein accession | YP_003330699 |
Protein GI | 270308641 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.593504 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGATTGGGA ATTGGAAAAA ATTTAAGAAA GTGTGGCTGC TGGGTCTGGC GGCAGTGATA TCGCTGAGCC TGTTTGCCGC CTGTGAGCAG ATAACCCCGA ATGCCGATAA TACCGAGATT GTTACCCTGA AGGTTGGTTC TACCAAACCT TTCAAGACTG CCAACCGCTT CAGTGACTAC TGGTACGGGG TACTAACCAA TCTGACTACC CATGACAGCC TGATAAGGCT GGGGGATGAC ATGTCCGTCA AGCCTTGGCT GGCCAAGTCA TGGACAGTGT CGGATGATGC CATGACATTT GTCTTTACTA TTGTAGACAA TGCCTACTGG CATGACGGTA CCAAACTGAC GGCTGAGGAT GTGGCCTTTT CAGTAGAGTA CTACCGTGAT TACATTGCGT CAGCCAGCTG GATGAAAGAT GTTATAGAAG ATGTAAGCTT TTCGGGGGAT ACGGTTACCT TGAGTTTGTC TCGTCCTTAC GGCAACCTCT TGACCGAGTT TATGACCTAT TCGGTTGTAC CCAAACATAT CTGGCAGGAT GTGGACGACC CGCTTAAGTA TAACCAGCCG GATATGACAG TCGGTTCAGG CCCATTTGTA TTTGAAAGTT TTGACCTTGC TTCCGGCAAG TTTATTTTCA AGGCTAACGA AGACTATTTT CAGGGCAAGC CAACTGTTGA TCGCCTTGAA GTGGATATCT ACCAGAATAT GGATGCTTTA GTTTTATCAC TGGCTAATGG TGATATAGAT ACCTGGTGGG ATTATTCGGG TACTTTTCCC TATACCAGCA TACCCGCCCT GATAAAGTCA GGCAAAGTGG ATTTTGAGAC CAGCACCTAT CTGGGTGTTC CGTCTGCATT GGGTTTTAAC CTTGAAGACG GCCCTGCCAG TGACATAAAT GTCCGCAAGG CTATTGCCGC GGCTATAAAC TATCAGCAGA TAATAGAATA CTTTTATGCG GGTTATGGCA GTGTGCCTAC CACTGGTTTT GTTCCCCCCA CCCACCCCAA CTACAATGCA AATCTGCCTT CTTTGGCATA TAATCCTGCA GAGGCAAATG CCCTGCTGGA TGCGGCCGGG TTGATGGATA CAGACGGGGA TGGCATTCGT GAAGATGCAT CCGGCCAGAA CATTTCCCTG AGGCTGCTGG CCAGATCTGA TCAGTCTACC AATATGCGTC TGGCTGAAAT ACTGCGGGAT GCCCTGTCTG AGATTGGGCT TGGGGTAGAA ATAAGGGCAC TTGACCTTTC GGCTTGGGCT TCGGTGAAGG ATGCCCTTGA TTATAATATG GTTCTCTTCG GGGCTACTCC CTGGGGGACC CTGATGCATG CCGGGCATGG TTCGGGCTAC TTTGATTCCA GACGTACCGG TCAGGGTGTT TTGCACAATC TGGATGTGGC TGAATATCTG GCCGCCTGTG ATGCCAGACT GGCTACGGCT GATCCTGCCC AGCAGGCTAT ACTGGACCTG CGGATACAGG AACTTACCGC CGAATATTTG CCGGGTATTG CCCTGGCCTG GACAGAGAGT GTCTACCCCT ACCAGCAGGG TTGGTCAGGC TGGGTGATAG ACAGTATCTA CGGAGGAGTT TTTAATGGCT TCTCCTTCTT GAGTGTTCGG TCTCCCTAA
|
Protein sequence | MIGNWKKFKK VWLLGLAAVI SLSLFAACEQ ITPNADNTEI VTLKVGSTKP FKTANRFSDY WYGVLTNLTT HDSLIRLGDD MSVKPWLAKS WTVSDDAMTF VFTIVDNAYW HDGTKLTAED VAFSVEYYRD YIASASWMKD VIEDVSFSGD TVTLSLSRPY GNLLTEFMTY SVVPKHIWQD VDDPLKYNQP DMTVGSGPFV FESFDLASGK FIFKANEDYF QGKPTVDRLE VDIYQNMDAL VLSLANGDID TWWDYSGTFP YTSIPALIKS GKVDFETSTY LGVPSALGFN LEDGPASDIN VRKAIAAAIN YQQIIEYFYA GYGSVPTTGF VPPTHPNYNA NLPSLAYNPA EANALLDAAG LMDTDGDGIR EDASGQNISL RLLARSDQST NMRLAEILRD ALSEIGLGVE IRALDLSAWA SVKDALDYNM VLFGATPWGT LMHAGHGSGY FDSRRTGQGV LHNLDVAEYL AACDARLATA DPAQQAILDL RIQELTAEYL PGIALAWTES VYPYQQGWSG WVIDSIYGGV FNGFSFLSVR SP
|
| |