| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0872 |
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| Symbol | |
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| ID | 4117202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | + |
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| Start bp | 912890 |
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| End bp | 914515 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638035655 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_643651 |
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| Protein GI | 108803714 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00426332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTCGAC GGAACGCGCG AGCCAGGGTA GGGCTAGCCG GGATCTCCCG CGGGGAGTTC
CTCAAGCTGA GCGGCGCCGG CCTCGCCGGC GCCGCTCTTC TGGGTGCTGC CGGCTGCGGC
GGCGAGCAGG GCGGCGGCCA GCGGGGCGGC GGTGGCGGCG GGCGGACGGA GCTCATCGTG
GGTCTGGACC AGGAGCCCGC CATCCTGAAC GGGTACATCG TGGGCGGGGA TCTGGTCGCC
ACCTCCAACG TCACCCGGCC CGTCATGGAG AGCGTGCTGC AGATAATGCC GGACCTCTCG
TACGCGCCGA AGCTCGCCGA CGGGGAGCCG CGGGTGGCCA GCGAGGACCC GCTCACCATC
GAGTTCAGGC TGAAGGACGG GATCACCTGG TCCGACGGGG AGCCGCTCAC CGTCGAGGAC
TACGTGTTCA CCTACAACAC CGTCATGAAC GATCGGTGGC AGATCATCAC GCGCGAGATC
TGGGACAGCA TAGACCGGAT CGAGACCCCC GACGAGCTGA CCGCCAGGAT CATCTTCAAG
AGGCCCGACG CCCGCTGGCG GGACATCCTT GCCGCCGACG TGCTGCCCAA GCACGTCCTG
CAGGGGAAGA ACTTCAACAA ATACTTCAAC GACCGGATCG TGGGCAGCGG CCCCTACGTC
TTCGAGGAGT GGCGCAAGGG GCAGAGCCTC ACGGTCGTCG CCAACGAGAA CTACTGGGGC
GACCCCCCGG CGATAAAGAA GATCACCTTC CGCTTCATCC CCGACACCAA CTCGCTGAAG
GCCGCCCTGC GCTCCGGCGA GGTGCAGTTC ATCAACCCGC CGCCGGACAT CGGGCTGATC
GAGGAGCTGC GGGGCTACGA CGGGGTGACC GTCCAGACCA AGTTCGGCAC GGTCTGGGAG
CACCTGGCCT TCAACGTGGA GAAGGTGGAC AACCTCAACA TCCGGCGGGC CATCGCCTAC
GCGGTGAACC GCCGCCAGCT GATCCAGGAG ATCCTGCAGG GCGAGGCCCG GCCGCTGCAG
AGCGTGTTGG TGCCCGAGCA GGAGCCCTTC TACACCCCGG CCTGGGAGCG CTACTCCTTC
GACCCGGACC GGGCGCGCCG GCTCGTGGAG CAGGCGCGGG GGGAGGGGGC CTCCACGGAG
ATAGAGTACT CCACCACCTC CGGGAACGCG CTGCGGGAGA CGGCCCAGCA GGTCATCCAG
CAGCAGATGG AGCAGGTGGG GATAACGCTC CGGATAAACA ACTCCTCCGC CGAGACCTAC
TTCGGGGAGC GCACGCCCGA GGGCGACTTC GAGATGGGCG AGTGGGCCTG GAGCGCGACC
CCCGACCCCT CCATCACCAC GCTCTTCGGG GCGAACCAGG TGCCGCCGAA CGGGCAGAAC
TACTACCGCT ACCGCAACGA GGAGGTCACC CGGCTGCTCG AGCAGGCCGA CATCACCGTG
GACCAGCAGG AGCGGGCCCG GCTCACCCGC AGGGCCCAGG AGCTCATGGC AGAGGACGTG
CCGCTGGTCC CGCTCTACCA GCGGCCCGAG ATCTACGCCT ACGCCGACAA CCTCGAGGGG
CCGAGGGTCA ACCCGACGCT GGCCACCGCC TTCTGGAACG TCGGGGAGTG GCGCTTCACC
GGGTAG
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| Protein sequence | MGRRNARARV GLAGISRGEF LKLSGAGLAG AALLGAAGCG GEQGGGQRGG GGGGRTELIV
GLDQEPAILN GYIVGGDLVA TSNVTRPVME SVLQIMPDLS YAPKLADGEP RVASEDPLTI
EFRLKDGITW SDGEPLTVED YVFTYNTVMN DRWQIITREI WDSIDRIETP DELTARIIFK
RPDARWRDIL AADVLPKHVL QGKNFNKYFN DRIVGSGPYV FEEWRKGQSL TVVANENYWG
DPPAIKKITF RFIPDTNSLK AALRSGEVQF INPPPDIGLI EELRGYDGVT VQTKFGTVWE
HLAFNVEKVD NLNIRRAIAY AVNRRQLIQE ILQGEARPLQ SVLVPEQEPF YTPAWERYSF
DPDRARRLVE QARGEGASTE IEYSTTSGNA LRETAQQVIQ QQMEQVGITL RINNSSAETY
FGERTPEGDF EMGEWAWSAT PDPSITTLFG ANQVPPNGQN YYRYRNEEVT RLLEQADITV
DQQERARLTR RAQELMAEDV PLVPLYQRPE IYAYADNLEG PRVNPTLATA FWNVGEWRFT
G
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