| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7214 |
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| Symbol | |
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| ID | 7380372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 183191 |
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| End bp | 184789 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643641319 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002539616 |
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| Protein GI | 222102577 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCA CCCTAACCCG CCGCAAGGCT TTGTTGCTCG GTGCCGCCCT TGGTGGCTCA
ACCCTGTTGC CAGCCTTTGG CTTTGCCGCT GACACCTCGA AGAAAGGCGG CATTGCCACC
TTTGTGGCCG TGGGCGAGCC AACAACGCTG GTGCCTTTGT CTGACACCAA CACCAGAACC
CGCGCCATCT CCACCAAAAT CCTCGAAGGT TTGGTGCGGT TTGATAGCAG TTTCAAACCC
CATCCGGTTC TGGCCGAATC CTGGGAGCTG TCCGCCGATG GCTTGCGCTT CACCTTCCGT
CTGCGCAAGG GCGTGAAATG GCATGATGGC AAGGATTTCA CCTCAGCCGA CGTGAAGTTT
TCGCTGCTGG CCTTCAAGAA AGTAGGCCCG CGTGGCCGTG TGACCTTTGC CAATGTATCG
GATGTGGAAA CGCCGGACAC GTTGACCGCC GTTGTGGTGC TGGCCAAGCC AGCCCCCTAT
CTGCTGCGCG CTTTGACGGG AGGCGAAACG CCAATCCTTC CCGCCCACGC CTACGCCTAC
GCCACGGACA ATTATGCAGA AAGCCCCAAT GGCAATGCGC CGATTGGCAC TGGTCCCTTT
GTGTTTGAAG AATGGAAGCG CGGCAGCTAC GTAAAACTCA AGCGCAACCC GAATTACTGG
CAGGCGGGCC TGCCGCATCT GGATGGTTTC GTGGCCCGGT TTGTGGGCGA TGGCGCTGCC
GCCTCGATTG CGCTTGAAAC CGGCGAGGCC GATTACAGCA CGGATGTATC CTTCAACGAT
ATTGAGCGGC TGAAGCAGAG CAAGACCCTG ACGGTGGATA TCTACACCGA CGCCTATCTC
AATAATGCTC AGGTGTTTGA GTTCAATCTC GACAACCCGA TCCTTGCCAA AGCAGAGGTG
CGCCATGCGC TGGCCCATGC CATTGATCGC AATTTCATCA TTGATGCGAT TTTCTACGGC
ACGGCGAAAC CAGCCTTTTC CAACATTCCG GCGGTGTTCA AAGACTATAA CGACGAAGCG
CCATTCCAAT ACGAGTTCGA CCTCAAAAAA GCCAATGAAC TGCTGGACAA GGCCGGACAT
CCGAAGGATG CCAATGGCAT CCGTTTCTCC CTGCGGCTGA CCTATATTCC CGGCGATAGC
TTCAAGAAAA CCGCTGAATA TTTCCGCTCC ACCTTCGGCA AGCTCGGCGT GAAGATCGAG
ATTGTCGATG GCGATCTCGC CACCTTTATC AAGCGCGTTT ACACCGAGCG CGGTTTTGAC
ATCAACCTCA ATGGCATCAG CCGATTGTTT GACCCCACGG CAGGCGTGCA GCGCCTCTAC
TGGTCGGATG GCATCAAAAA TATAGCACCC TATGTCAATG CCGCTCATTA TAACAATCCG
AAGGTGGATG ACCTTTTTCG CGCCGCTGCC ATTGAAGTGG ATGAGAAAAA GCGCGACGAG
GAGTTCAAGG AAATCCAGAA AATCACCGGT GCGGACCTAC CGAATTTCTC GGTCATTGCC
CTTCCCACGG TGATTGCCCG CAACAAGCGC ATCCAAAATC TGGTGACCAC CATCGACGTG
GCATACAGCG ACCTCGCAGA AGCATGGAAG GACAGTTGA
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| Protein sequence | MTITLTRRKA LLLGAALGGS TLLPAFGFAA DTSKKGGIAT FVAVGEPTTL VPLSDTNTRT
RAISTKILEG LVRFDSSFKP HPVLAESWEL SADGLRFTFR LRKGVKWHDG KDFTSADVKF
SLLAFKKVGP RGRVTFANVS DVETPDTLTA VVVLAKPAPY LLRALTGGET PILPAHAYAY
ATDNYAESPN GNAPIGTGPF VFEEWKRGSY VKLKRNPNYW QAGLPHLDGF VARFVGDGAA
ASIALETGEA DYSTDVSFND IERLKQSKTL TVDIYTDAYL NNAQVFEFNL DNPILAKAEV
RHALAHAIDR NFIIDAIFYG TAKPAFSNIP AVFKDYNDEA PFQYEFDLKK ANELLDKAGH
PKDANGIRFS LRLTYIPGDS FKKTAEYFRS TFGKLGVKIE IVDGDLATFI KRVYTERGFD
INLNGISRLF DPTAGVQRLY WSDGIKNIAP YVNAAHYNNP KVDDLFRAAA IEVDEKKRDE
EFKEIQKITG ADLPNFSVIA LPTVIARNKR IQNLVTTIDV AYSDLAEAWK DS
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