More than 300 homologs were found in PanDaTox collection
for query gene Sden_1209 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_1209  LytTr DNA-binding region  100 
 
 
240 aa  494  1e-139  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5312  two component transcriptional regulator, LytTR family  34.11 
 
 
255 aa  138  8.999999999999999e-32  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0977362 
 
 
-
 
NC_013730  Slin_2091  two component transcriptional regulator, LytTR family  32.82 
 
 
259 aa  137  1e-31  Spirosoma linguale DSM 74  Bacteria  normal  0.0504817  normal  0.478744 
 
 
-
 
NC_013132  Cpin_5824  two component transcriptional regulator, LytTR family  33.73 
 
 
258 aa  135  4e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0489181 
 
 
-
 
NC_013132  Cpin_0271  two component transcriptional regulator, LytTR family  31.76 
 
 
256 aa  132  3.9999999999999996e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2775  two component transcriptional regulator, LytTR family  33.85 
 
 
258 aa  130  2.0000000000000002e-29  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4908  LytTR family two component transcriptional regulator  32.56 
 
 
255 aa  126  3e-28  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_1444  two component transcriptional regulator, LytTR family  31.37 
 
 
256 aa  125  7e-28  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.317386 
 
 
-
 
NC_014230  CA2559_12408  two-component system response regulator  31.91 
 
 
251 aa  125  8.000000000000001e-28  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.401855  n/a   
 
 
-
 
NC_013037  Dfer_2354  two component transcriptional regulator, LytTR family  28.52 
 
 
256 aa  124  2e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6060  two component transcriptional regulator, LytTR family  32.94 
 
 
253 aa  122  5e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6676  two component transcriptional regulator, LytTR family  33.07 
 
 
253 aa  122  6e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1794  two component transcriptional regulator, LytTR family  33.08 
 
 
260 aa  122  6e-27  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0804  two component transcriptional regulator, LytTR family  29.55 
 
 
251 aa  121  8e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2256  two component transcriptional regulator, LytTR family  29.23 
 
 
262 aa  121  9e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.596319 
 
 
-
 
NC_013061  Phep_2789  response regulator receiver  28.24 
 
 
254 aa  120  9.999999999999999e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0758  two component transcriptional regulator, LytTR family  30.59 
 
 
256 aa  121  9.999999999999999e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.649382 
 
 
-
 
NC_013730  Slin_1836  two component transcriptional regulator, LytTR family  31.42 
 
 
258 aa  120  1.9999999999999998e-26  Spirosoma linguale DSM 74  Bacteria  normal  0.367672  normal  0.467017 
 
 
-
 
NC_013061  Phep_2439  LytTr DNA-binding region  32.28 
 
 
255 aa  120  3e-26  Pedobacter heparinus DSM 2366  Bacteria  normal  0.697869  normal 
 
 
-
 
NC_013730  Slin_2868  two component transcriptional regulator, LytTR family  31.27 
 
 
259 aa  119  3e-26  Spirosoma linguale DSM 74  Bacteria  normal  0.0154807  normal 
 
 
-
 
NC_013037  Dfer_1317  two component transcriptional regulator, LytTR family  29.62 
 
 
261 aa  118  9e-26  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4674  LytTR family two component transcriptional regulator  30.59 
 
 
254 aa  117  9.999999999999999e-26  Flavobacterium johnsoniae UW101  Bacteria  normal  0.124147  n/a   
 
 
-
 
NC_009441  Fjoh_4001  LytTR family two component transcriptional regulator  32.03 
 
 
255 aa  116  3e-25  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0600  two component transcriptional regulator, LytTR family  28.3 
 
 
265 aa  115  5e-25  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.315052 
 
 
-
 
NC_009441  Fjoh_3229  LytTR family two component transcriptional regulator  28.35 
 
 
250 aa  115  7.999999999999999e-25  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_7151  two component transcriptional regulator, LytTR family  30.59 
 
 
249 aa  114  1.0000000000000001e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6406  two component transcriptional regulator, LytTR family  29.01 
 
 
252 aa  112  5e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3726  two component transcriptional regulator, LytTR family  30.04 
 
 
252 aa  112  7.000000000000001e-24  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.304835 
 
 
-
 
NC_013132  Cpin_6102  two component transcriptional regulator, LytTR family  30.71 
 
 
252 aa  111  8.000000000000001e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2661  two component transcriptional regulator, LytTR family  28.17 
 
 
252 aa  111  1.0000000000000001e-23  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1475  two component transcriptional regulator, LytTR family  31.25 
 
 
255 aa  111  1.0000000000000001e-23  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.059663 
 
 
-
 
NC_013037  Dfer_0800  two component transcriptional regulator, LytTR family  28.8 
 
 
251 aa  107  1e-22  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0307  two component transcriptional regulator, LytTR family  26.1 
 
 
250 aa  107  2e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5335  two component transcriptional regulator, LytTR family  26.19 
 
 
253 aa  106  4e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.709567 
 
 
-
 
NC_013037  Dfer_5405  two component transcriptional regulator, LytTR family  28.92 
 
 
243 aa  103  3e-21  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.379459 
 
 
-
 
NC_008009  Acid345_3838  LytR/AlgR family transcriptional regulator  29.63 
 
 
254 aa  100  3e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.479778 
 
 
-
 
NC_013061  Phep_1542  LytTr DNA-binding region  28.45 
 
 
245 aa  99.4  4e-20  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.300206 
 
 
-
 
NC_010571  Oter_3913  LytTR family two component transcriptional regulator  27.2 
 
 
268 aa  98.6  8e-20  Opitutus terrae PB90-1  Bacteria  normal  0.316099  normal 
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  28.22 
 
 
246 aa  94  2e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal 
 
 
-
 
NC_013170  Ccur_01160  response regulator of the LytR/AlgR family  26.45 
 
 
238 aa  90.9  2e-17  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_0137  two component transcriptional regulator, LytTR family  24.9 
 
 
237 aa  89.4  5e-17  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_1246  LytTR family two component transcriptional regulator  28.34 
 
 
254 aa  88.6  8e-17  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3487  LytR/AlgR family transcriptional regulator  26.29 
 
 
253 aa  88.2  9e-17  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.76921  normal 
 
 
-
 
NC_013037  Dfer_1004  two component transcriptional regulator, LytTR family  27.19 
 
 
257 aa  88.2  1e-16  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00878343  normal  0.279198 
 
 
-
 
NC_004116  SAG1016  response regulator  26.34 
 
 
244 aa  87.8  1e-16  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_1323  two component transcriptional regulator, LytTR family  26.64 
 
 
237 aa  87  2e-16  Atopobium parvulum DSM 20469  Bacteria  normal  0.0540721  normal  0.0273831 
 
 
-
 
NC_013132  Cpin_0374  two component transcriptional regulator, LytTR family  27.16 
 
 
242 aa  86.3  4e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_0847  response regulator receiver  28.46 
 
 
232 aa  86.3  4e-16  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2397  two component transcriptional regulator, LytTR family  24.51 
 
 
261 aa  85.9  5e-16  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0067  LytTR family two component transcriptional regulator  28.51 
 
 
268 aa  85.5  7e-16  Opitutus terrae PB90-1  Bacteria  normal  0.169577  normal  0.169612 
 
 
-
 
NC_003910  CPS_3718  response regulator  27.24 
 
 
275 aa  84.7  0.000000000000001  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0161  LytR/AlgR family transcriptional regulator  24.25 
 
 
270 aa  84.3  0.000000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  27.94 
 
 
317 aa  84.7  0.000000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
NC_007912  Sde_0480  response regulator receiver domain-containing protein  27.45 
 
 
265 aa  84  0.000000000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_0097  LytR/AlgR family transcriptional regulator  28.29 
 
 
245 aa  84  0.000000000000002  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0837  response regulator receiver protein  35.59 
 
 
153 aa  83.2  0.000000000000003  Spirosoma linguale DSM 74  Bacteria  normal  0.925678  normal 
 
 
-
 
NC_013037  Dfer_5142  two component transcriptional regulator, LytTR family  26.21 
 
 
244 aa  83.6  0.000000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.546377  normal 
 
 
-
 
NC_013165  Shel_00400  response regulator of the LytR/AlgR family  25.82 
 
 
237 aa  83.2  0.000000000000003  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.132657  normal 
 
 
-
 
NC_008228  Patl_1149  response regulator receiver protein  30.54 
 
 
239 aa  83.2  0.000000000000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3900  response regulator receiver domain-containing protein  28.09 
 
 
261 aa  80.5  0.00000000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1381  LytR/AlgR family transcriptional regulator  25.29 
 
 
273 aa  80.9  0.00000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.557466 
 
 
-
 
NC_013132  Cpin_4084  two component transcriptional regulator, LytTR family  28.5 
 
 
244 aa  80.5  0.00000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.445273  normal  0.0209217 
 
 
-
 
NC_010184  BcerKBAB4_5234  LytTR family two component transcriptional regulator  25.2 
 
 
246 aa  79.7  0.00000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5573  response regulator LytR  26.4 
 
 
246 aa  80.1  0.00000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0227  LytR/AlgR family transcriptional regulator  26.74 
 
 
265 aa  80.1  0.00000000000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.312706  n/a   
 
 
-
 
NC_010506  Swoo_4382  LytTR family two component transcriptional regulator  27.99 
 
 
273 aa  80.1  0.00000000000003  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2186  two component transcriptional regulator, LytTR family  26.33 
 
 
275 aa  80.1  0.00000000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5621  response regulator LytR  26.4 
 
 
246 aa  80.1  0.00000000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3668  two-component response regulator AlgR  26.21 
 
 
243 aa  79.7  0.00000000000004  Saccharophagus degradans 2-40  Bacteria  decreased coverage  0.00827536  normal  0.334671 
 
 
-
 
NC_011773  BCAH820_5536  response regulator LytR  26.4 
 
 
246 aa  79.3  0.00000000000005  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS5295  response regulator LytR  26.4 
 
 
246 aa  79.3  0.00000000000005  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5122  response regulator  26.4 
 
 
246 aa  79.3  0.00000000000005  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5691  response regulator LytR  26.4 
 
 
246 aa  79.3  0.00000000000005  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2385  response regulator receiver protein  26.44 
 
 
272 aa  79.3  0.00000000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2443  LytTR family two component transcriptional regulator  22.49 
 
 
279 aa  79.3  0.00000000000005  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5565  response regulator LytR  25.4 
 
 
246 aa  79.3  0.00000000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2035  response regulator receiver protein  25.8 
 
 
282 aa  79  0.00000000000006  Acidovorax citrulli AAC00-1  Bacteria  normal  0.150352  normal 
 
 
-
 
NC_009513  Lreu_0904  LytTR family two component transcriptional regulator  27.68 
 
 
243 aa  78.6  0.00000000000007  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5137  response regulator  26.4 
 
 
246 aa  78.6  0.00000000000009  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_1645  two component transcriptional regulator, LytTR family  28.31 
 
 
232 aa  77.8  0.0000000000001  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1860  two component transcriptional regulator, LytTR family  25.56 
 
 
266 aa  78.2  0.0000000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0885  response regulator  25.22 
 
 
247 aa  77.8  0.0000000000001  Oenococcus oeni PSU-1  Bacteria  normal  0.0355946  n/a   
 
 
-
 
NC_011772  BCG9842_B5384  response regulator LytR  25.4 
 
 
246 aa  78.2  0.0000000000001  Bacillus cereus G9842  Bacteria  normal  0.662493  normal  0.485514 
 
 
-
 
NC_009441  Fjoh_1679  LytTR family two component transcriptional regulator  28.71 
 
 
238 aa  77.8  0.0000000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_07024  transcriptional regulator  26.67 
 
 
263 aa  77.4  0.0000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_1819  LytTr DNA-binding response regulator  22.75 
 
 
260 aa  77  0.0000000000002  Colwellia psychrerythraea 34H  Bacteria  normal  0.148301  n/a   
 
 
-
 
NC_013132  Cpin_0671  two component transcriptional regulator, LytTR family  26.09 
 
 
251 aa  77  0.0000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_3958  LytTR family two component transcriptional regulator  24 
 
 
246 aa  77.4  0.0000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000974  response regulator of the LytR/AlgR family  26.67 
 
 
263 aa  77.4  0.0000000000002  Vibrio sp. Ex25  Bacteria  normal  0.728867  n/a   
 
 
-
 
NC_013132  Cpin_5383  two component transcriptional regulator, LytTR family  27.62 
 
 
235 aa  77  0.0000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2282  response regulator receiver protein  26.49 
 
 
276 aa  77  0.0000000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.81  normal 
 
 
-
 
NC_010730  SYO3AOP1_0715  two component transcriptional regulator, LytTR family  24.6 
 
 
245 aa  76.6  0.0000000000003  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00500528  n/a   
 
 
-
 
NC_012791  Vapar_3613  two component transcriptional regulator, LytTR family  28.11 
 
 
281 aa  76.3  0.0000000000004  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  28.9 
 
 
252 aa  75.9  0.0000000000005  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_011901  Tgr7_0031  response regulator receiver protein  23.79 
 
 
243 aa  75.9  0.0000000000006  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4801  two component transcriptional regulator, LytTR family  30.62 
 
 
240 aa  75.9  0.0000000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  0.154299  normal 
 
 
-
 
NC_012856  Rpic12D_1290  two component transcriptional regulator, LytTR family  25.55 
 
 
277 aa  74.7  0.000000000001  Ralstonia pickettii 12D  Bacteria  normal  normal  0.212023 
 
 
-
 
NC_009616  Tmel_0114  LytTR family two component transcriptional regulator  26.45 
 
 
226 aa  75.1  0.000000000001  Thermosipho melanesiensis BI429  Bacteria  normal  0.310837  n/a   
 
 
-
 
NC_013132  Cpin_1844  two component transcriptional regulator, LytTR family  25.23 
 
 
236 aa  73.6  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_4495  LytTR family two component transcriptional regulator  27.27 
 
 
245 aa  73.9  0.000000000002  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.17015 
 
 
-
 
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