| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1381 |
|---|
| Symbol | |
|---|
| ID | 4038184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1490576 |
|---|
| End bp | 1491397 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637976765 |
|---|
| Product | LytR/AlgR family transcriptional regulator |
|---|
| Protein accession | YP_583533 |
|---|
| Protein GI | 94310323 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.557466 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCCGA CGCTGCTGAT CGCCGACGAC GAACCGTTGC TCGCGCGCGT GCTGGAATCC
GAACTGAAGG CGCTGTGGCC AGAGGCCCAG ATCGTCGCCG TGGTGCATGA CGGCGTGGCG
GCGCTGGAGG CCACGCGCGA TCAGCAACCC GATGTGGCCT TCCTTGATAT CCGGATGCCG
GGTATGAGTG GCATGGACGT GGCTCGCGAG TTGATCGAAT TCGACCGGCC GCCGCTGGTG
GTGTTCGTCA CCGCCTATGA CCAGTTCGCA CTAGAAGCCT TCGAGCGCGC GGCGGTCGAT
TACGTGCTCA AGCCCGTGCA GCATGAGCGG CTGGAAGCCA CCGTCGGCCG CCTGAAGGCG
CGCATGGCCG CCCGGATCGA AGCGGAGGAA GAGGGCGATG CCGATAGCGA CATCGGCACG
ATGGTCGACA CGGACCGATT GGGGCAATTA CTGCAGCGGC TGGAAATGCT GGAGAGACCC
GCACAGGCAC GGGGCCAGTA TCTGCGATTC ATCAAGGCGT TGGTGGGGCA GGAGGTGCGC
ATCATCCCGG TGGACGAAGT GGTCTATCTG GAAGCCACCG ACAAGTACGT GAACGTGGTG
TCCAGCAACG GCGAGGCGCT GATCCGCACG AGCCTGAGGG AGTTGATGCA GCAACTCGAC
CCTGACCGTT TCTGGCAGAT CCACCGCGGC ACGGTGGTCA ATATCGACTG CGTGGCCAGC
GCGGCGACGC AATCGCTTGG GCGCCTGTCG CTCAAGCTGC GCAATCGCCC GGAATCGCTG
GCGGTCGCCA GGCAGTACGC CCATCTGTTC AAGCAGATGT AG
|
|---|
| Protein sequence | MSPTLLIADD EPLLARVLES ELKALWPEAQ IVAVVHDGVA ALEATRDQQP DVAFLDIRMP
GMSGMDVARE LIEFDRPPLV VFVTAYDQFA LEAFERAAVD YVLKPVQHER LEATVGRLKA
RMAARIEAEE EGDADSDIGT MVDTDRLGQL LQRLEMLERP AQARGQYLRF IKALVGQEVR
IIPVDEVVYL EATDKYVNVV SSNGEALIRT SLRELMQQLD PDRFWQIHRG TVVNIDCVAS
AATQSLGRLS LKLRNRPESL AVARQYAHLF KQM
|
|---|
| |