More than 300 homologs were found in PanDaTox collection
for query gene SO_3046 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004347  SO_3046    100 
 
 
969 bp  1921    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_1442  methyl-accepting chemotaxis sensory transducer  85.48 
 
 
1455 bp  773    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1507  methyl-accepting chemotaxis sensory transducer  86.13 
 
 
1455 bp  821    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1499  methyl-accepting chemotaxis sensory transducer  85.81 
 
 
1455 bp  797    Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2727  methyl-accepting chemotaxis sensory transducer  79.21 
 
 
1455 bp  319  8e-85  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000872044  n/a   
 
 
-
 
NC_011663  Sbal223_1632  methyl-accepting chemotaxis sensory transducer  79.1 
 
 
1455 bp  311  2.0000000000000002e-82  Shewanella baltica OS223  Bacteria  normal  0.19262  hitchhiker  0.00019204 
 
 
-
 
NC_009997  Sbal195_2820  methyl-accepting chemotaxis sensory transducer  78.32 
 
 
1455 bp  250  6e-64  Shewanella baltica OS195  Bacteria  normal  0.0806929  normal  0.41842 
 
 
-
 
NC_009665  Shew185_2744  methyl-accepting chemotaxis sensory transducer  78.27 
 
 
1455 bp  248  3e-63  Shewanella baltica OS185  Bacteria  normal  0.234847  n/a   
 
 
-
 
NC_009438  Sputcn32_2422  methyl-accepting chemotaxis sensory transducer  77.82 
 
 
1455 bp  178  1.9999999999999998e-42  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2659  methyl-accepting chemotaxis protein  92.86 
 
 
1671 bp  119  2.0000000000000002e-24  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1387  methyl-accepting chemotaxis sensory transducer  91.11 
 
 
2004 bp  115  2.0000000000000002e-23  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3174  methyl-accepting chemotaxis sensory transducer  91.25 
 
 
1863 bp  103  9e-20  Shewanella sp. MR-4  Bacteria  normal  0.733563  normal  0.773778 
 
 
-
 
NC_009665  Shew185_3782  methyl-accepting chemotaxis sensory transducer  88.89 
 
 
1575 bp  99.6  1e-18  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  89.53 
 
 
1887 bp  99.6  1e-18  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3725  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  88.89 
 
 
1575 bp  99.6  1e-18  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2990  methyl-accepting chemotaxis sensory transducer  88.89 
 
 
2004 bp  99.6  1e-18  Shewanella baltica OS185  Bacteria  normal  0.413203  n/a   
 
 
-
 
NC_009052  Sbal_2976  methyl-accepting chemotaxis sensory transducer  88.89 
 
 
2004 bp  99.6  1e-18  Shewanella baltica OS155  Bacteria  hitchhiker  0.000241408  n/a   
 
 
-
 
NC_010506  Swoo_2947  methyl-accepting chemotaxis sensory transducer  88.89 
 
 
1449 bp  99.6  1e-18  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3134  methyl-accepting chemotaxis sensory transducer  88.89 
 
 
2004 bp  99.6  1e-18  Shewanella baltica OS195  Bacteria  normal  0.0135223  normal  0.80442 
 
 
-
 
NC_009052  Sbal_0543  methyl-accepting chemotaxis sensory transducer  88.76 
 
 
1575 bp  97.6  6e-18  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2263  methyl-accepting chemotaxis sensory transducer  81.82 
 
 
1449 bp  95.6  2e-17  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00569391  normal  0.100749 
 
 
-
 
NC_008322  Shewmr7_0792  methyl-accepting chemotaxis sensory transducer  90 
 
 
1863 bp  95.6  2e-17  Shewanella sp. MR-7  Bacteria  normal  0.912748  normal  0.850506 
 
 
-
 
NC_009997  Sbal195_3908  methyl-accepting chemotaxis sensory transducer  87.78 
 
 
1575 bp  91.7  4e-16  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0764  methyl-accepting chemotaxis sensory transducer  89.61 
 
 
1863 bp  89.7  0.000000000000001  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2530  methyl-accepting chemotaxis sensory transducer with Cache sensor  88.75 
 
 
1602 bp  87.7  0.000000000000006  Shewanella baltica OS223  Bacteria  normal  0.616311  hitchhiker  0.00580613 
 
 
-
 
NC_009052  Sbal_1754    88.75 
 
 
1602 bp  87.7  0.000000000000006  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3455  methyl-accepting chemotaxis sensory transducer  86.96 
 
 
1632 bp  87.7  0.000000000000006  Shewanella baltica OS185  Bacteria  normal  0.0121993  n/a   
 
 
-
 
NC_008321  Shewmr4_2995  methyl-accepting chemotaxis sensory transducer  89.47 
 
 
1626 bp  87.7  0.000000000000006  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00226615  normal  0.196783 
 
 
-
 
NC_008322  Shewmr7_3076  methyl-accepting chemotaxis sensory transducer  89.47 
 
 
1626 bp  87.7  0.000000000000006  Shewanella sp. MR-7  Bacteria  unclonable  0.0000214454  normal  0.805143 
 
 
-
 
NC_009456  VC0395_0331  methyl-accepting chemotaxis protein  85.44 
 
 
1737 bp  85.7  0.00000000000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  89.33 
 
 
1863 bp  85.7  0.00000000000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1444    87.21 
 
 
3459 bp  83.8  0.00000000000009  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000202  methyl-accepting chemotaxis protein  83.08 
 
 
1431 bp  83.8  0.00000000000009  Vibrio sp. Ex25  Bacteria  normal  0.856149  n/a   
 
 
-
 
NC_009665  Shew185_3428  methyl-accepting chemotaxis sensory transducer  89.04 
 
 
2004 bp  81.8  0.0000000000003  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0343  methyl-accepting chemotaxis sensory transducer  88.31 
 
 
1644 bp  81.8  0.0000000000003  Saccharophagus degradans 2-40  Bacteria  normal  0.0441023  normal  0.46066 
 
 
-
 
NC_009997  Sbal195_3553  methyl-accepting chemotaxis sensory transducer  89.04 
 
 
2004 bp  81.8  0.0000000000003  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4635  methyl-accepting chemotaxis protein  88.16 
 
 
1977 bp  79.8  0.000000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_0081  putative methyl-accepting chemotaxis sensory transducer  87.5 
 
 
1635 bp  79.8  0.000000000001  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3212  methyl-accepting chemotaxis sensory transducer  86.9 
 
 
2022 bp  79.8  0.000000000001  Shewanella sp. ANA-3  Bacteria  normal  0.990285  normal  0.659639 
 
 
-
 
NC_013457  VEA_001468  methyl-accepting chemotaxis protein  88.73 
 
 
2001 bp  77.8  0.000000000005  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  88 
 
 
1863 bp  77.8  0.000000000005  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_011138  MADE_01731  Methyl-accepting chemotaxis protein  88.73 
 
 
1620 bp  77.8  0.000000000005  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2140  putative methyl-accepting chemotaxis sensory transducer  90.48 
 
 
1440 bp  77.8  0.000000000005  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2345  putative methyl-accepting chemotaxis sensory transducer  88.73 
 
 
2001 bp  77.8  0.000000000005  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.60686 
 
 
-
 
NC_004347  SO_3838  methyl-accepting chemotaxis protein  86.59 
 
 
1863 bp  75.8  0.00000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_1066  methyl-accepting chemotaxis protein  87.84 
 
 
2058 bp  75.8  0.00000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.395137  n/a   
 
 
-
 
NC_009457  VC0395_A2596  methyl-accepting chemotaxis protein  87.84 
 
 
1695 bp  75.8  0.00000000002  Vibrio cholerae O395  Bacteria  unclonable  0.00000000000057467  n/a   
 
 
-
 
NC_008577  Shewana3_1862  methyl-accepting chemotaxis sensory transducer  85.56 
 
 
1518 bp  75.8  0.00000000002  Shewanella sp. ANA-3  Bacteria  normal  0.149959  normal 
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  87.01 
 
 
1884 bp  73.8  0.00000000008  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_007954  Sden_0861  chemotaxis sensory transducer  81.95 
 
 
1446 bp  73.8  0.00000000008  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1601  chemotaxis sensory transducer  81.75 
 
 
1503 bp  73.8  0.00000000008  Shewanella denitrificans OS217  Bacteria  normal  0.78336  n/a   
 
 
-
 
NC_007954  Sden_2435  chemotaxis sensory transducer  89.23 
 
 
1176 bp  73.8  0.00000000008  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3111  methyl-accepting chemotaxis sensory transducer with Cache sensor  85.39 
 
 
1791 bp  73.8  0.00000000008  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3173  methyl-accepting chemotaxis sensory transducer  87.67 
 
 
1626 bp  73.8  0.00000000008  Shewanella sp. ANA-3  Bacteria  normal  0.0131988  normal 
 
 
-
 
NC_009654  Mmwyl1_1460  methyl-accepting chemotaxis sensory transducer  91.07 
 
 
1605 bp  71.9  0.0000000003  Marinomonas sp. MWYL1  Bacteria  normal  0.695651  normal 
 
 
-
 
NC_009783  VIBHAR_02788  hypothetical protein  85.23 
 
 
2097 bp  71.9  0.0000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_0713  methyl-accepting chemotaxis protein  85.23 
 
 
1422 bp  71.9  0.0000000003  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3424  methyl-accepting chemotaxis sensory transducer  88.24 
 
 
2025 bp  71.9  0.0000000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.560716  n/a   
 
 
-
 
NC_009784  VIBHAR_05406  histidine kinase/response regulator hybrid protein  88.24 
 
 
2001 bp  71.9  0.0000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_2839  methyl-accepting chemotaxis sensory transducer  89.06 
 
 
1641 bp  71.9  0.0000000003  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0263  methyl-accepting chemotaxis protein  89.83 
 
 
1497 bp  69.9  0.000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03602    87.32 
 
 
1626 bp  69.9  0.000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  85.54 
 
 
1905 bp  69.9  0.000000001  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4309  methyl-accepting chemotaxis sensory transducer  87.32 
 
 
1887 bp  69.9  0.000000001  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00619864  normal 
 
 
-
 
NC_009456  VC0395_0250  methyl-accepting chemotaxis protein  86.08 
 
 
1557 bp  69.9  0.000000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3382  methyl-accepting chemotaxis sensory transducer  87.32 
 
 
1632 bp  69.9  0.000000001  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3785  methyl-accepting chemotaxis sensory transducer  89.83 
 
 
1962 bp  69.9  0.000000001  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0950  methyl-accepting chemotaxis sensory transducer  83.5 
 
 
2004 bp  69.9  0.000000001  Shewanella putrefaciens CN-32  Bacteria  normal  0.231949  n/a   
 
 
-
 
NC_003910  CPS_1439  methyl-accepting chemotaxis protein  84.88 
 
 
1926 bp  67.9  0.000000005  Colwellia psychrerythraea 34H  Bacteria  normal  0.336763  n/a   
 
 
-
 
NC_009784  VIBHAR_05936  hypothetical protein  81.97 
 
 
1443 bp  67.9  0.000000005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_1102  methyl-accepting chemotaxis protein  84.04 
 
 
1917 bp  67.9  0.000000005  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0570  methyl-accepting chemotaxis sensory transducer  84.88 
 
 
2025 bp  67.9  0.000000005  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0391  methyl-accepting chemotaxis sensory transducer  86.49 
 
 
1500 bp  67.9  0.000000005  Saccharophagus degradans 2-40  Bacteria  normal  0.0811848  normal 
 
 
-
 
NC_013456  VEA_004004  methyl-accepting chemotaxis protein  84.88 
 
 
1992 bp  67.9  0.000000005  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1243  methyl-accepting chemotaxis sensory transducer  86.49 
 
 
2004 bp  67.9  0.000000005  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1313  methyl-accepting chemotaxis sensory transducer  86.49 
 
 
2004 bp  67.9  0.000000005  Shewanella sp. MR-7  Bacteria  decreased coverage  0.00146838  normal 
 
 
-
 
NC_008322  Shewmr7_2170  methyl-accepting chemotaxis sensory transducer  84.44 
 
 
1518 bp  67.9  0.000000005  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0210  methyl-accepting chemotaxis protein  84.88 
 
 
1632 bp  67.9  0.000000005  Vibrio cholerae O395  Bacteria  decreased coverage  0.000000000000824359  n/a   
 
 
-
 
NC_008345  Sfri_3719  methyl-accepting chemotaxis sensory transducer  82.73 
 
 
1440 bp  67.9  0.000000005  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0481837  n/a   
 
 
-
 
NC_010506  Swoo_3399  methyl-accepting chemotaxis sensory transducer  84.44 
 
 
1581 bp  67.9  0.000000005  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1293  methyl-accepting chemotaxis sensory transducer  86.49 
 
 
2004 bp  67.9  0.000000005  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  84.44 
 
 
2025 bp  67.9  0.000000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_009997  Sbal195_2826  methyl-accepting chemotaxis sensory transducer  83.87 
 
 
1740 bp  65.9  0.00000002  Shewanella baltica OS195  Bacteria  normal  normal  0.0277282 
 
 
-
 
NC_003910  CPS_4528  methyl-accepting chemotaxis protein  87.69 
 
 
2019 bp  65.9  0.00000002  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  84.27 
 
 
1941 bp  65.9  0.00000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_007912  Sde_0671  putative methyl-accepting chemotaxis sensory transducer  85.71 
 
 
1596 bp  65.9  0.00000002  Saccharophagus degradans 2-40  Bacteria  normal  0.178659  hitchhiker  0.000000219808 
 
 
-
 
NC_009831  Ssed_3827  methyl-accepting chemotaxis transducer  86.3 
 
 
2088 bp  65.9  0.00000002  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000221184 
 
 
-
 
NC_009901  Spea_1629  methyl-accepting chemotaxis sensory transducer with Cache sensor  90.57 
 
 
1872 bp  65.9  0.00000002  Shewanella pealeana ATCC 700345  Bacteria  normal  0.438395  n/a   
 
 
-
 
NC_008321  Shewmr4_0946  methyl-accepting chemotaxis sensory transducer  85.71 
 
 
2004 bp  65.9  0.00000002  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0959  methyl-accepting chemotaxis sensory transducer  90.57 
 
 
1632 bp  65.9  0.00000002  Shewanella sp. MR-7  Bacteria  normal  0.656726  normal  0.666936 
 
 
-
 
NC_008322  Shewmr7_0984  methyl-accepting chemotaxis sensory transducer  85.71 
 
 
2004 bp  65.9  0.00000002  Shewanella sp. MR-7  Bacteria  normal  normal  0.869835 
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  85.71 
 
 
1917 bp  65.9  0.00000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_008577  Shewana3_4019  methyl-accepting chemotaxis sensory transducer  86.3 
 
 
1977 bp  65.9  0.00000002  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_4355  methyl-accepting chemotaxis sensory transducer  87.69 
 
 
1623 bp  65.9  0.00000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.31766  n/a   
 
 
-
 
NC_011663  Sbal223_1626  methyl-accepting chemotaxis sensory transducer  83.87 
 
 
1740 bp  65.9  0.00000002  Shewanella baltica OS223  Bacteria  normal  0.154062  normal  0.0682347 
 
 
-
 
NC_009052  Sbal_2733  methyl-accepting chemotaxis sensory transducer  83.87 
 
 
1740 bp  65.9  0.00000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1793  methyl-accepting chemotaxis sensory transducer  85.71 
 
 
1602 bp  65.9  0.00000002  Shewanella baltica OS195  Bacteria  normal  0.0175347  normal  0.776493 
 
 
-
 
NC_009901  Spea_3492  methyl-accepting chemotaxis sensory transducer with Cache sensor  86.11 
 
 
1881 bp  63.9  0.00000008  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0868  methyl-accepting chemotaxis protein  86.76 
 
 
1611 bp  63.9  0.00000008  Vibrio cholerae O395  Bacteria  hitchhiker  0.000231989  n/a   
 
 
-
 
NC_009665  Shew185_4208  methyl-accepting chemotaxis sensory transducer  85 
 
 
1983 bp  63.9  0.00000008  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
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