More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_1066 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_1066  methyl-accepting chemotaxis protein  100 
 
 
685 aa  1378    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.395137  n/a   
 
 
-
 
NC_007005  Psyr_0913  histidine kinase, HAMP region: chemotaxis sensory transducer  93.28 
 
 
685 aa  1251    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.724419  normal 
 
 
-
 
NC_007492  Pfl01_4758  chemotaxis sensory transducer  70.18 
 
 
685 aa  859    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0781085  normal  0.27831 
 
 
-
 
NC_009439  Pmen_4122  methyl-accepting chemotaxis sensory transducer  46.72 
 
 
676 aa  501  1e-140  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0960  methyl-accepting chemotaxis sensory transducer  26.79 
 
 
666 aa  204  6e-51  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000181378  n/a   
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  36.18 
 
 
621 aa  187  4e-46  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  34.97 
 
 
628 aa  184  4.0000000000000006e-45  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  33.51 
 
 
541 aa  181  4e-44  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  33.15 
 
 
628 aa  181  4.999999999999999e-44  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4403  methyl-accepting chemotaxis sensory transducer  27.7 
 
 
670 aa  181  5.999999999999999e-44  Pseudomonas putida W619  Bacteria  normal  0.604884  normal 
 
 
-
 
NC_004347  SO_0987  methyl-accepting chemotaxis protein  35.76 
 
 
554 aa  178  3e-43  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_0870  methyl-accepting chemotaxis sensory transducer  34.75 
 
 
554 aa  177  5e-43  Shewanella baltica OS155  Bacteria  normal  0.0571565  n/a   
 
 
-
 
NC_009092  Shew_0808  methyl-accepting chemotaxis sensory transducer  33.59 
 
 
554 aa  177  7e-43  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3494  methyl-accepting chemotaxis sensory transducer  34.75 
 
 
554 aa  177  8e-43  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3617  methyl-accepting chemotaxis sensory transducer  34.75 
 
 
554 aa  176  9e-43  Shewanella baltica OS195  Bacteria  normal  normal  0.964358 
 
 
-
 
NC_011663  Sbal223_3422  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.75 
 
 
554 aa  176  9e-43  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  33.33 
 
 
639 aa  175  1.9999999999999998e-42  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  33.79 
 
 
630 aa  176  1.9999999999999998e-42  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  35.31 
 
 
541 aa  175  1.9999999999999998e-42  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_009656  PSPA7_5137  putative chemotaxis transducer  28.96 
 
 
673 aa  175  1.9999999999999998e-42  Pseudomonas aeruginosa PA7  Bacteria  normal  0.459514  n/a   
 
 
-
 
NC_009997  Sbal195_3553  methyl-accepting chemotaxis sensory transducer  34.47 
 
 
667 aa  175  2.9999999999999996e-42  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0837  methyl-accepting chemotaxis sensory transducer  31.55 
 
 
554 aa  174  3.9999999999999995e-42  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2952  methyl-accepting chemotaxis sensory transducer  34.31 
 
 
541 aa  174  5e-42  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000751538  normal 
 
 
-
 
NC_011663  Sbal223_3356  methyl-accepting chemotaxis sensory transducer  34.47 
 
 
667 aa  174  5e-42  Shewanella baltica OS223  Bacteria  normal  0.386472  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  35.33 
 
 
637 aa  174  5e-42  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  35.33 
 
 
541 aa  174  5e-42  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2521  methyl-accepting chemotaxis sensory transducer  36.33 
 
 
533 aa  174  5e-42  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000172201 
 
 
-
 
NC_009665  Shew185_3428  methyl-accepting chemotaxis sensory transducer  34.47 
 
 
667 aa  173  7.999999999999999e-42  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0934  methyl-accepting chemotaxis sensory transducer  34.47 
 
 
667 aa  173  7.999999999999999e-42  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II1022  methyl-accepting chemotaxis protein  34.62 
 
 
628 aa  173  1e-41  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.771007  n/a   
 
 
-
 
NC_009438  Sputcn32_3200  methyl-accepting chemotaxis sensory transducer  31.48 
 
 
554 aa  172  1e-41  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3052  methyl-accepting chemotaxis sensory transducer  34.97 
 
 
554 aa  172  2e-41  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0581  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
554 aa  172  2e-41  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0630  methyl-accepting chemotaxis sensory transducer  35.84 
 
 
554 aa  171  4e-41  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2880  putative methyl-accepting chemotaxis sensory transducer  32.98 
 
 
558 aa  171  5e-41  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_0724  methyl-accepting chemotaxis sensory transducer  30.65 
 
 
539 aa  171  6e-41  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3299  methyl-accepting chemotaxis sensory transducer  34.66 
 
 
554 aa  170  6e-41  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3491  methyl-accepting chemotaxis sensory transducer  35.54 
 
 
554 aa  170  8e-41  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  33.85 
 
 
620 aa  170  8e-41  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_008322  Shewmr7_3199  methyl-accepting chemotaxis sensory transducer  35.76 
 
 
554 aa  170  8e-41  Shewanella sp. MR-7  Bacteria  normal  normal  0.927661 
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  34.52 
 
 
620 aa  170  9e-41  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_008609  Ppro_3107  methyl-accepting chemotaxis sensory transducer  36.1 
 
 
542 aa  169  1e-40  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  34.28 
 
 
549 aa  170  1e-40  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_5093  histidine kinase, HAMP region: chemotaxis sensory transducer  27.05 
 
 
676 aa  169  1e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2834  histidine kinase, HAMP region: chemotaxis sensory transducer  26.5 
 
 
671 aa  169  1e-40  Dechloromonas aromatica RCB  Bacteria  normal  0.188903  normal 
 
 
-
 
NC_008321  Shewmr4_3323  methyl-accepting chemotaxis sensory transducer  35.54 
 
 
554 aa  169  1e-40  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  35.49 
 
 
548 aa  169  2e-40  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_009654  Mmwyl1_3322  methyl-accepting chemotaxis sensory transducer  33.9 
 
 
539 aa  168  2.9999999999999998e-40  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.910778 
 
 
-
 
NC_009654  Mmwyl1_0969  methyl-accepting chemotaxis sensory transducer  32.2 
 
 
631 aa  168  2.9999999999999998e-40  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1374  methyl-accepting chemotaxis protein  35.11 
 
 
541 aa  168  4e-40  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2347  methyl-accepting chemotaxis sensory transducer  31.92 
 
 
533 aa  168  4e-40  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0732  methyl-accepting chemotaxis sensory transducer  33.74 
 
 
555 aa  167  5.9999999999999996e-40  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.177926 
 
 
-
 
NC_009456  VC0395_0210  methyl-accepting chemotaxis protein  34.25 
 
 
543 aa  167  5.9999999999999996e-40  Vibrio cholerae O395  Bacteria  decreased coverage  0.000000000000824359  n/a   
 
 
-
 
NC_008577  Shewana3_3924  methyl-accepting chemotaxis sensory transducer  31.54 
 
 
527 aa  167  6.9999999999999995e-40  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0946  methyl-accepting chemotaxis sensory transducer  32.96 
 
 
667 aa  166  9e-40  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  36.88 
 
 
773 aa  166  1.0000000000000001e-39  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_009092  Shew_0876  methyl-accepting chemotaxis sensory transducer  32.6 
 
 
674 aa  166  1.0000000000000001e-39  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3601  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.94 
 
 
554 aa  166  1.0000000000000001e-39  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  30.51 
 
 
638 aa  166  1.0000000000000001e-39  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_008577  Shewana3_0948  methyl-accepting chemotaxis sensory transducer  32.96 
 
 
667 aa  166  1.0000000000000001e-39  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5554  methyl-accepting chemotaxis protein  26.55 
 
 
676 aa  166  2.0000000000000002e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3114  histidine kinase, HAMP region: chemotaxis sensory transducer  34.19 
 
 
541 aa  166  2.0000000000000002e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.860602  normal 
 
 
-
 
NC_009831  Ssed_1498  methyl-accepting chemotaxis sensory transducer  33.52 
 
 
687 aa  166  2.0000000000000002e-39  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000111484  normal 
 
 
-
 
NC_008463  PA14_58650  putative chemotaxis transducer  29.01 
 
 
673 aa  165  2.0000000000000002e-39  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  38.14 
 
 
637 aa  165  3e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  37.38 
 
 
541 aa  165  3e-39  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_008321  Shewmr4_0824  methyl-accepting chemotaxis sensory transducer  35.15 
 
 
554 aa  165  3e-39  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00067966 
 
 
-
 
NC_008740  Maqu_0956  methyl-accepting chemotaxis sensory transducer  25.3 
 
 
676 aa  164  3e-39  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0984  methyl-accepting chemotaxis sensory transducer  32.77 
 
 
667 aa  164  3e-39  Shewanella sp. MR-7  Bacteria  normal  normal  0.869835 
 
 
-
 
NC_009483  Gura_0612  methyl-accepting chemotaxis sensory transducer  30.5 
 
 
543 aa  165  3e-39  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  33.77 
 
 
541 aa  164  4.0000000000000004e-39  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  34.37 
 
 
620 aa  164  4.0000000000000004e-39  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_009997  Sbal195_3789  methyl-accepting chemotaxis sensory transducer  34.1 
 
 
554 aa  164  4.0000000000000004e-39  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0641  methyl-accepting chemotaxis sensory transducer  34.1 
 
 
568 aa  164  4.0000000000000004e-39  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3666  methyl-accepting chemotaxis sensory transducer  34.64 
 
 
554 aa  164  5.0000000000000005e-39  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0633  methyl-accepting chemotaxis sensory transducer  32.87 
 
 
552 aa  164  5.0000000000000005e-39  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0809  methyl-accepting chemotaxis sensory transducer  34.35 
 
 
532 aa  164  5.0000000000000005e-39  Geobacter bemidjiensis Bem  Bacteria  normal  0.826751  n/a   
 
 
-
 
NC_011901  Tgr7_1672  methyl-accepting chemotaxis sensory transducer  34.29 
 
 
544 aa  164  5.0000000000000005e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1023  methyl-accepting chemotaxis protein  32.01 
 
 
578 aa  164  5.0000000000000005e-39  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008739  Maqu_3979  methyl-accepting chemotaxis sensory transducer  32.87 
 
 
552 aa  164  5.0000000000000005e-39  Marinobacter aquaeolei VT8  Bacteria  normal  0.594367  n/a   
 
 
-
 
NC_009483  Gura_2845  methyl-accepting chemotaxis sensory transducer  31.61 
 
 
549 aa  164  7e-39  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000597879  n/a   
 
 
-
 
NC_009654  Mmwyl1_3323  methyl-accepting chemotaxis sensory transducer  34.91 
 
 
539 aa  163  9e-39  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  31.64 
 
 
638 aa  163  9e-39  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  35.58 
 
 
568 aa  163  9e-39  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0950  methyl-accepting chemotaxis sensory transducer  33.71 
 
 
667 aa  163  9e-39  Shewanella putrefaciens CN-32  Bacteria  normal  0.231949  n/a   
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  33.15 
 
 
552 aa  162  1e-38  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_003910  CPS_4372  methyl-accepting chemotaxis protein  35.63 
 
 
619 aa  163  1e-38  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0375  methyl-accepting chemotaxis sensory transducer  33.05 
 
 
674 aa  162  1e-38  Geobacter uraniireducens Rf4  Bacteria  normal  0.129925  n/a   
 
 
-
 
NC_009831  Ssed_3759  methyl-accepting chemotaxis sensory transducer  33.43 
 
 
554 aa  163  1e-38  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0990388  normal 
 
 
-
 
NC_011146  Gbem_1884  methyl-accepting chemotaxis sensory transducer  33.08 
 
 
547 aa  162  1e-38  Geobacter bemidjiensis Bem  Bacteria  normal  0.114501  n/a   
 
 
-
 
NC_008577  Shewana3_3173  methyl-accepting chemotaxis sensory transducer  34.57 
 
 
541 aa  162  1e-38  Shewanella sp. ANA-3  Bacteria  normal  0.0131988  normal 
 
 
-
 
NC_007005  Psyr_2220  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  34.67 
 
 
646 aa  162  2e-38  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.071358  normal  0.520396 
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  35.44 
 
 
648 aa  162  2e-38  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_007954  Sden_2955  chemotaxis sensory transducer  35.03 
 
 
497 aa  162  2e-38  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_0068  methyl-accepting chemotaxis sensory transducer  24.78 
 
 
648 aa  162  2e-38  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  35.57 
 
 
716 aa  162  2e-38  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_008609  Ppro_1221  methyl-accepting chemotaxis sensory transducer  34.87 
 
 
544 aa  162  2e-38  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000143655  n/a   
 
 
-
 
NC_010506  Swoo_3605  methyl-accepting chemotaxis sensory transducer  34.42 
 
 
666 aa  162  2e-38  Shewanella woodyi ATCC 51908  Bacteria  normal  0.644417  normal 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  34.93 
 
 
564 aa  161  3e-38  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0339  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
541 aa  161  3e-38  Pseudomonas putida F1  Bacteria  normal  0.722367  normal 
 
 
-
 
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