| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1498 |
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| Symbol | |
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| ID | 5610361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1779969 |
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| End bp | 1782032 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932364 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001473237 |
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| Protein GI | 157374637 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000111484 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATGA CAATTAAAGC TAAATTAATC ATATTAGTAG GTGCCTTACT CGTTGCTGTT
TCCGGCTACT TCATCGTCAA CATGATCGTG ATTGAACAGG CGGTTCTCAA ACAAGAAGAG
CTTAATATCA GCAATAAAGT CGAAAGCCTG GTAAAACAGA ATCTTATCGG TCAGGTGGAT
ACGCTCAGCC GTTCGGTCAA CGACTTCTAT CAACAGTCCA GAGTAGAAAA TATCAGACAG
GCTCTGGGCG ATGAGATTGT CATGTTTCGC GGTATCATAA ATCGCATGTA CGAGAATAAT
CTCACCGATG ATCCCGATAT GATGGTCTAT ACCTTTATCA ACGAATATCA GTGGGGAAAG
GGCCGTTACC TGTTTGCCTA TGACGCAGAC ACCCTGACAA ACGAAGCCGC CGGTATTGGT
GGTGTATCGA TGGGAAATAG TCGTGATGTT GTCGATGAAA AAGGCAATTA TTACGCTCGA
AATATTGTAG CCGCCGCCAA AGAAAATAAG GTAGGTTTCA CCAGCTACTT CTTCTCCAAT
CCAACCACAG GGAAGGTCGA AGAGAAGCTC TCTGCCTCCT TCTATTTTGA ACCACTCAAT
CTGGTCATTG CTACCGGTGA GTACATCAGC ACCCTGAAAC AGGATAAGGT AACGGCCGCA
CTACAGACCG TTATGGCAGC AAAATATGGT GAAAGTGGTG AGTTCTGGAT ACAAGATACC
AGCGGTAAAA TCCTGGCCCA CTCTCAAAAA AGCCTCATAG GTCAACAAAC AGCAAACACC
GATAAGGCAA AGCAAGCCTT GGGTGAGCAG CCTGAGGCCT TCGTCCTGCT CCCGGCCTCC
TCTTCGGCGA ATAGCGCCGA GGCCAAAATC TCATACGTCA GGAAGATCCT CCCCGAGTGG
AATTGGGTCA TTGGCACCGG CGCCTATGAG TCCGATGTCA CCTCTATTCA ACAGGGACTG
ACCGAAGGAA CCCGTGAGAT ATTTGACAGT AAAATCTACC AGAGTATCGC GGTAACGAGT
GTACTTATCG TCCTTGCGCT TATTTTCTGT GTATGGCTGC TGAACAAGAT AATCACAGAT
ATGGTCGTAC TTAAAGAGCG CATAGAGACC CTCTCCACCG GCGAAGCAGA TCTGACCTCT
CGATTGGAGA TCGCTACCCG TGATGAGCTT GCAGATATAG GTCATTCGGT GAATAATTTT
ATCAGTTACC TTCAAGATAT GATGCTCGAT ATCTCTAAAT CCTCTAAAGA GATCACCGAA
GGGATCACGC AACTTAACGG CCAATCTGAA CGAAACAGCC AGGCCCTCAA TAGTCACACC
TCAGAGACTG AACTCGCAGT TACGGCGATC ACTCAGATGA ACGCCTCAGC AGAAGCCGTG
GCCCAAAGTG CGGTGCAAAC GGCGTCGAGC ACCCAACAAG CCAATGAAGA AGCTAAAGCC
TCTAAGGTCA CCGTTGTCGA TGCTTCAAAC AGTGTCATTG CTCTCGTAGA GGAGATGAAT
ACGGCGACCA GCAGCATCAA TACCATGAGC GAGAACACCA AGCAGATCGT ATCGGTACTC
GACGTTATAG GAGGGATCGC CGAACAGACT AATCTGCTCG CTCTCAATGC CGCCATCGAA
GCCGCCCGCG CCGGAGAACA GGGACGAGGA TTTGCGGTCG TCGCCGATGA GGTACGCTCG
CTCGCCTCTC GTACACAATC GAGTACCGCT CAGATAGAGG AGATCTTGTC CACATTACGA
CGCGATGCGG CAACGGCAGA AAAAGTGATG ACCGAGACTA AGAATAGCTG CCAGAAGGTG
GCAGAAAATA CCTCACGCGT CACCACCAGC CTTGATACCA TGACAGGTTC TATCGTGGAA
ATTAACGATT TAGGCAGTCA AATCGCGACG GCATCCGAGC AGCAAAGTGC AGTAACCGAT
GAGATTAGCC GAAATATGCA CACCATAGAG GCCATGGCAC TTGAGCTATT ACAAAACGGC
CAACAAACGG CGCTAAGCAC TCAAAACCTT TCGGCAGCTA ACGAGCAACT CAATGTGTTA
GTCAGTAAGT TTAAGCTCGC TTAA
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| Protein sequence | MKMTIKAKLI ILVGALLVAV SGYFIVNMIV IEQAVLKQEE LNISNKVESL VKQNLIGQVD
TLSRSVNDFY QQSRVENIRQ ALGDEIVMFR GIINRMYENN LTDDPDMMVY TFINEYQWGK
GRYLFAYDAD TLTNEAAGIG GVSMGNSRDV VDEKGNYYAR NIVAAAKENK VGFTSYFFSN
PTTGKVEEKL SASFYFEPLN LVIATGEYIS TLKQDKVTAA LQTVMAAKYG ESGEFWIQDT
SGKILAHSQK SLIGQQTANT DKAKQALGEQ PEAFVLLPAS SSANSAEAKI SYVRKILPEW
NWVIGTGAYE SDVTSIQQGL TEGTREIFDS KIYQSIAVTS VLIVLALIFC VWLLNKIITD
MVVLKERIET LSTGEADLTS RLEIATRDEL ADIGHSVNNF ISYLQDMMLD ISKSSKEITE
GITQLNGQSE RNSQALNSHT SETELAVTAI TQMNASAEAV AQSAVQTASS TQQANEEAKA
SKVTVVDASN SVIALVEEMN TATSSINTMS ENTKQIVSVL DVIGGIAEQT NLLALNAAIE
AARAGEQGRG FAVVADEVRS LASRTQSSTA QIEEILSTLR RDAATAEKVM TETKNSCQKV
AENTSRVTTS LDTMTGSIVE INDLGSQIAT ASEQQSAVTD EISRNMHTIE AMALELLQNG
QQTALSTQNL SAANEQLNVL VSKFKLA
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