More than 300 homologs were found in PanDaTox collection
for query gene Amir_5783 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_5783  transcriptional regulator, Crp/Fnr family  100 
 
 
212 aa  404  1.0000000000000001e-112  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00268451  n/a   
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  42.65 
 
 
222 aa  139  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1644  Crp/FNR family transcriptional regulator  38.99 
 
 
223 aa  122  3e-27  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1659  cyclic nucleotide-binding  38.53 
 
 
223 aa  119  3.9999999999999996e-26  Salinispora tropica CNB-440  Bacteria  normal  0.834954  normal 
 
 
-
 
NC_013510  Tcur_1118  transcriptional regulator, Crp/Fnr family  41.63 
 
 
240 aa  117  1.9999999999999998e-25  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5506  Crp/FNR family transcriptional regulator  37.14 
 
 
246 aa  107  9.000000000000001e-23  Frankia sp. EAN1pec  Bacteria  normal  0.324567  normal  0.438631 
 
 
-
 
NC_009953  Sare_0070  cyclic nucleotide-binding protein  36.54 
 
 
227 aa  105  6e-22  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.376283 
 
 
-
 
NC_013510  Tcur_2257  transcriptional regulator, Crp/Fnr family  34.25 
 
 
234 aa  102  6e-21  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00000784359  n/a   
 
 
-
 
NC_013131  Caci_8335  putative transcriptional regulator, Crp/Fnr family  37 
 
 
209 aa  99.4  4e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.339186  normal 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  33.16 
 
 
225 aa  99.4  4e-20  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  35.64 
 
 
225 aa  99.4  4e-20  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  35.45 
 
 
225 aa  98.6  6e-20  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_013093  Amir_5511  transcriptional regulator, Crp/Fnr family  34.15 
 
 
227 aa  98.6  6e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  0.360617  n/a   
 
 
-
 
NC_013131  Caci_7216  transcriptional regulator, Crp/Fnr family  35.26 
 
 
246 aa  96.7  2e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.726682  normal 
 
 
-
 
NC_013093  Amir_5850  transcriptional regulator, Crp/Fnr family  37.86 
 
 
223 aa  94.4  1e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0120826  n/a   
 
 
-
 
NC_013739  Cwoe_0602  transcriptional regulator, Crp/Fnr family  33.33 
 
 
225 aa  91.3  1e-17  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.628877 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  36.87 
 
 
222 aa  89.7  3e-17  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_009921  Franean1_1677  cyclic nucleotide-binding protein  32.68 
 
 
258 aa  86.7  2e-16  Frankia sp. EAN1pec  Bacteria  normal  0.506462  normal  0.511537 
 
 
-
 
NC_013947  Snas_1232  transcriptional regulator, Crp/Fnr family  30.19 
 
 
235 aa  86.3  3e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6844  transcriptional regulator, Crp/Fnr family  33.98 
 
 
235 aa  84.7  9e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0901192  n/a   
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  32.65 
 
 
225 aa  84.3  0.000000000000001  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  33.68 
 
 
225 aa  84.7  0.000000000000001  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  35.26 
 
 
222 aa  84  0.000000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  35.75 
 
 
225 aa  83.2  0.000000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3150  Crp/FNR family transcriptional regulator  28.1 
 
 
252 aa  82.8  0.000000000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  35.44 
 
 
225 aa  82.4  0.000000000000005  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  30.73 
 
 
240 aa  82  0.000000000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  35.23 
 
 
225 aa  81.3  0.00000000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  33.5 
 
 
225 aa  80.5  0.00000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  26.94 
 
 
226 aa  80.1  0.00000000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_008781  Pnap_3212  CRP/FNR family transcriptional regulator  31.98 
 
 
229 aa  79.7  0.00000000000003  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0543887  normal 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  33.5 
 
 
231 aa  79  0.00000000000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_008820  P9303_28321  putative regulatory protein  31.58 
 
 
231 aa  78.6  0.00000000000007  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.270503 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  25.84 
 
 
219 aa  78.6  0.00000000000007  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  26.67 
 
 
225 aa  78.2  0.00000000000009  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  26.07 
 
 
243 aa  77.8  0.0000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  29.38 
 
 
226 aa  77.8  0.0000000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  28.87 
 
 
224 aa  77.8  0.0000000000001  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  34.54 
 
 
257 aa  76.6  0.0000000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_013947  Snas_4977  transcriptional regulator, Crp/Fnr family  30.29 
 
 
234 aa  76.3  0.0000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.111601 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  31.94 
 
 
225 aa  76.3  0.0000000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  35.29 
 
 
242 aa  75.9  0.0000000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_014210  Ndas_2683  transcriptional regulator, Crp/Fnr family  34.07 
 
 
236 aa  75.9  0.0000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.168298 
 
 
-
 
NC_013093  Amir_5851  transcriptional regulator, Crp/Fnr family  31.25 
 
 
242 aa  75.9  0.0000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0930905  n/a   
 
 
-
 
NC_011145  AnaeK_2607  cyclic nucleotide-binding protein  32.12 
 
 
215 aa  75.1  0.0000000000008  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  29.26 
 
 
225 aa  73.9  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_011891  A2cp1_2700  cyclic nucleotide-binding protein  32.12 
 
 
215 aa  74.3  0.000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  hitchhiker  0.00108848  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  34.67 
 
 
228 aa  74.3  0.000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  31.44 
 
 
234 aa  73.6  0.000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  30.73 
 
 
226 aa  73.2  0.000000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  29.53 
 
 
226 aa  73.9  0.000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  27.6 
 
 
232 aa  73.9  0.000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  26.8 
 
 
227 aa  73.9  0.000000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1256  cyclic nucleotide-binding domain-containing protein  32.12 
 
 
215 aa  73.2  0.000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  32.46 
 
 
220 aa  72.8  0.000000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_009621  Smed_5695  cyclic nucleotide-binding protein  33.5 
 
 
233 aa  72.4  0.000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.0746044  normal 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  28.57 
 
 
217 aa  72.8  0.000000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  29.1 
 
 
236 aa  72.4  0.000000000004  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  35.32 
 
 
225 aa  72  0.000000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  31.55 
 
 
261 aa  71.6  0.000000000009  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  26.05 
 
 
234 aa  71.2  0.00000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  31.77 
 
 
224 aa  71.2  0.00000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  33.82 
 
 
230 aa  71.2  0.00000000001  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_013510  Tcur_1167  transcriptional regulator, Crp/Fnr family  32.09 
 
 
231 aa  70.5  0.00000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0781257  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  22.43 
 
 
236 aa  70.9  0.00000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  26.13 
 
 
238 aa  70.5  0.00000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1608  putative transcriptional regulator, Crp/Fnr family  30.46 
 
 
248 aa  69.7  0.00000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  22.43 
 
 
236 aa  69.7  0.00000000003  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  25.63 
 
 
238 aa  69.7  0.00000000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  33.33 
 
 
230 aa  69.7  0.00000000003  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  31.9 
 
 
225 aa  69.3  0.00000000004  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  29.32 
 
 
226 aa  69.3  0.00000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_011729  PCC7424_4798  cyclic nucleotide-binding protein  25.52 
 
 
227 aa  69.3  0.00000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  28.72 
 
 
238 aa  69.3  0.00000000004  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  30.37 
 
 
227 aa  68.9  0.00000000005  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_3957  transcriptional regulator, Crp/Fnr family  33.14 
 
 
289 aa  68.9  0.00000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  29.47 
 
 
226 aa  68.9  0.00000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_013093  Amir_0632  putative transcriptional regulator, Crp/Fnr family  31.34 
 
 
236 aa  68.9  0.00000000006  Actinosynnema mirum DSM 43827  Bacteria  normal  0.649143  n/a   
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  28.37 
 
 
234 aa  68.9  0.00000000006  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  30.89 
 
 
226 aa  68.9  0.00000000006  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  27.75 
 
 
227 aa  68.6  0.00000000007  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  31.28 
 
 
226 aa  68.2  0.00000000008  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  31.68 
 
 
226 aa  68.2  0.00000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  28.93 
 
 
254 aa  67.4  0.0000000001  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  24.76 
 
 
231 aa  67.8  0.0000000001  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  29.56 
 
 
226 aa  67.8  0.0000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  27.98 
 
 
227 aa  68.2  0.0000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  31.94 
 
 
249 aa  67.8  0.0000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  26.67 
 
 
233 aa  67.8  0.0000000001  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_002939  GSU1992  Crp/FNR family transcriptional regulator  28.91 
 
 
226 aa  67  0.0000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.103472  n/a   
 
 
-
 
NC_013739  Cwoe_2918  transcriptional regulator, Crp/Fnr family  34.03 
 
 
226 aa  67  0.0000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.172063  normal  0.392966 
 
 
-
 
NC_007516  Syncc9605_2514  Crp/FNR family transcriptional regulator  29.84 
 
 
231 aa  67  0.0000000002  Synechococcus sp. CC9605  Bacteria  normal  normal  0.619242 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  30.48 
 
 
239 aa  67  0.0000000002  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  28.81 
 
 
223 aa  67  0.0000000002  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  25.62 
 
 
235 aa  67.4  0.0000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_010681  Bphyt_1092  transcriptional regulator, Crp/Fnr family  29.41 
 
 
234 aa  66.6  0.0000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  24.76 
 
 
229 aa  66.6  0.0000000003  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  28.93 
 
 
254 aa  66.2  0.0000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_009511  Swit_4116  CRP/FNR family transcriptional regulator  30 
 
 
205 aa  66.6  0.0000000003  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011887  Mnod_8112  transcriptional regulator, Crp/Fnr family  28.31 
 
 
229 aa  66.2  0.0000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
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