155 homologs were found in PanDaTox collection
for query gene Veis_1015 on replicon NC_008786
Organism: Verminephrobacter eiseniae EF01-2



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008786  Veis_1015  restriction modification system DNA specificity subunit  100 
 
 
575 aa  1163    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_5859  putative type I restriction-modification system, S subunit  41.89 
 
 
584 aa  434  1e-120  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_3719  restriction modification system DNA specificity subunit  41.68 
 
 
585 aa  410  1e-113  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1311  restriction modification system DNA specificity subunit  41.62 
 
 
578 aa  311  2e-83  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008322  Shewmr7_2862  restriction modification system DNA specificity subunit  34.87 
 
 
589 aa  300  5e-80  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4611  restriction modification system DNA specificity subunit  32.33 
 
 
561 aa  280  6e-74  Pseudomonas putida F1  Bacteria  normal  0.483614  hitchhiker  0.0000795371 
 
 
-
 
NC_009656  PSPA7_6044  type I restriction-modification system subunit S  34.19 
 
 
547 aa  273  5.000000000000001e-72  Pseudomonas aeruginosa PA7  Bacteria  normal  0.061065  n/a   
 
 
-
 
NC_009943  Dole_0822  restriction modification system DNA specificity subunit  33.33 
 
 
577 aa  273  5.000000000000001e-72  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3227  restriction modification system DNA specificity subunit  32.5 
 
 
575 aa  271  2e-71  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_1897  restriction modification system DNA specificity subunit  33.51 
 
 
611 aa  271  2.9999999999999997e-71  Psychromonas ingrahamii 37  Bacteria  normal  hitchhiker  0.00184495 
 
 
-
 
NC_007954  Sden_1237  restriction modification system DNA specificity subunit  34.05 
 
 
633 aa  265  2e-69  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0501  restriction modification system DNA specificity subunit  33.68 
 
 
612 aa  265  2e-69  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.435558 
 
 
-
 
NC_008639  Cpha266_1398  restriction modification system DNA specificity subunit  31.83 
 
 
557 aa  263  8.999999999999999e-69  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4880  putative type I restriction-modification system S subunit  32.14 
 
 
571 aa  258  2e-67  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.960431 
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  31.6 
 
 
616 aa  241  2.9999999999999997e-62  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4742  type I restriction-modification system, S subunit  31.27 
 
 
576 aa  237  3e-61  Pseudomonas putida KT2440  Bacteria  normal  0.266617  hitchhiker  0.00441093 
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  28.17 
 
 
565 aa  231  3e-59  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_011206  Lferr_0835  restriction modification system DNA specificity domain  39.34 
 
 
563 aa  217  5e-55  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.835919  normal  0.945638 
 
 
-
 
NC_011761  AFE_0686  type I restriction-modification system, S subunit, putative  39.34 
 
 
561 aa  217  5e-55  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.840975  n/a   
 
 
-
 
NC_007413  Ava_3267  restriction modification system DNA specificity subunit  28.86 
 
 
557 aa  210  6e-53  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0920403  decreased coverage  0.00535253 
 
 
-
 
NC_008609  Ppro_0355  restriction modification system DNA specificity subunit  28.5 
 
 
590 aa  207  5e-52  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_3030  restriction modification system DNA specificity subunit  30.1 
 
 
564 aa  205  2e-51  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2496  subunit S of type I restriction-modification system  28.26 
 
 
565 aa  181  2.9999999999999997e-44  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00268922  n/a   
 
 
-
 
NC_009972  Haur_1281  restriction modification system DNA specificity subunit  33.09 
 
 
398 aa  167  4e-40  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1201  restriction modification system DNA specificity domain protein  27.35 
 
 
572 aa  160  5e-38  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_4012  restriction modification system DNA specificity subunit  40.4 
 
 
436 aa  153  1e-35  Frankia sp. CcI3  Bacteria  normal  0.848484  normal  0.567977 
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  43.24 
 
 
397 aa  148  2.0000000000000003e-34  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_007514  Cag_1526  restriction endonuclease S subunits-like  34.69 
 
 
386 aa  143  7e-33  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1253  Type I restriction enzyme EcoAI specificity protein  34.55 
 
 
597 aa  143  9e-33  Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  0.00376854  normal 
 
 
-
 
NC_002967  TDE2744  type I restriction-modification system, S subunit  24.7 
 
 
532 aa  142  1.9999999999999998e-32  Treponema denticola ATCC 35405  Bacteria  normal  0.0181132  n/a   
 
 
-
 
NC_011138  MADE_03610  type I site-specific deoxyribonuclease  38.02 
 
 
360 aa  137  4e-31  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_2409  restriction modification system DNA specificity subunit  39.06 
 
 
442 aa  137  6.0000000000000005e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.39474  normal 
 
 
-
 
NC_009077  Mjls_2226  restriction modification system DNA specificity subunit  35.77 
 
 
451 aa  135  1.9999999999999998e-30  Mycobacterium sp. JLS  Bacteria  normal  0.890862  normal 
 
 
-
 
NC_011729  PCC7424_4139  restriction modification system DNA specificity domain protein  35.35 
 
 
238 aa  131  3e-29  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008752  Aave_3358  restriction modification system DNA specificity subunit  39.09 
 
 
429 aa  131  4.0000000000000003e-29  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0521612  normal 
 
 
-
 
NC_009715  CCV52592_1061  putative type I restriction-modification system, S subunit  23.51 
 
 
528 aa  128  3e-28  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  41.4 
 
 
425 aa  125  2e-27  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_009338  Mflv_0804  restriction modification system DNA specificity subunit  37.11 
 
 
368 aa  123  9.999999999999999e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.526121  normal  0.427419 
 
 
-
 
NC_013730  Slin_3089  restriction modification system DNA specificity domain protein  24.56 
 
 
520 aa  119  9.999999999999999e-26  Spirosoma linguale DSM 74  Bacteria  normal  0.497517  normal  0.376247 
 
 
-
 
NC_009379  Pnuc_1132  restriction modification system DNA specificity subunit  22.77 
 
 
556 aa  119  9.999999999999999e-26  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.817215  n/a   
 
 
-
 
NC_010814  Glov_1414  restriction modification system DNA specificity domain  31.39 
 
 
447 aa  117  7.999999999999999e-25  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.00014984  n/a   
 
 
-
 
NC_011832  Mpal_0900  restriction modification system DNA specificity domain protein  25.97 
 
 
471 aa  116  8.999999999999998e-25  Methanosphaerula palustris E1-9c  Archaea  normal  normal  0.963501 
 
 
-
 
NC_007963  Csal_0086  restriction modification system DNA specificity protein  28.16 
 
 
538 aa  110  8.000000000000001e-23  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013502  Rmar_2893  restriction modification system DNA specificity domain protein  31.37 
 
 
237 aa  100  1e-19  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1635  restriction modification system DNA specificity domain protein  33 
 
 
419 aa  99  2e-19  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0235263  normal 
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  21.06 
 
 
477 aa  95.9  2e-18  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010730  SYO3AOP1_0387  restriction modification system DNA specificity domain  28.14 
 
 
435 aa  94.7  4e-18  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0681662  n/a   
 
 
-
 
NC_008639  Cpha266_1492  restriction modification system DNA specificity subunit  21.37 
 
 
479 aa  93.6  1e-17  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0735  restriction modification system DNA specificity subunit  32.95 
 
 
392 aa  93.2  1e-17  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.142305 
 
 
-
 
NC_010717  PXO_02074  HsdS polypeptide, part of CfrA family  39.81 
 
 
151 aa  85.1  0.000000000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  20.33 
 
 
476 aa  85.1  0.000000000000004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0508  restriction modification system DNA specificity subunit  23.31 
 
 
511 aa  79  0.0000000000002  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_2277  restriction modification system DNA specificity domain protein  25.51 
 
 
433 aa  79  0.0000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  0.200455  hitchhiker  0.00000677276 
 
 
-
 
NC_011832  Mpal_1095  restriction modification system DNA specificity subunit  29.03 
 
 
180 aa  78.2  0.0000000000004  Methanosphaerula palustris E1-9c  Archaea  normal  0.0307222  normal  0.460019 
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  30.65 
 
 
426 aa  77.8  0.0000000000005  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_1087  restriction modification system DNA specificity subunit  30.88 
 
 
437 aa  76.6  0.000000000001  Opitutus terrae PB90-1  Bacteria  normal  0.0762586  normal 
 
 
-
 
NC_007484  Noc_1204  restriction modification system DNA specificity subunit  21.49 
 
 
547 aa  75.9  0.000000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.340549  n/a   
 
 
-
 
NC_008577  Shewana3_2960  restriction modification system DNA specificity subunit  22.7 
 
 
587 aa  75.9  0.000000000002  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0599  type I restriction-modification system, S subunit  29.09 
 
 
458 aa  75.9  0.000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_3777  restriction endonuclease S subunits-like protein  28.64 
 
 
419 aa  75.1  0.000000000003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3850  restriction endonuclease S subunits-like protein  28.64 
 
 
419 aa  75.1  0.000000000003  Mycobacterium sp. KMS  Bacteria  normal  0.554786  normal 
 
 
-
 
NC_011060  Ppha_1452  restriction modification system DNA specificity domain  28.65 
 
 
392 aa  74.7  0.000000000004  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0462219  n/a   
 
 
-
 
NC_009715  CCV52592_0371  type I restriction-modification system S subunit  23.08 
 
 
323 aa  73.9  0.000000000007  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_2852  restriction endonuclease S subunits-like protein  28.29 
 
 
412 aa  73.6  0.00000000001  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0584008 
 
 
-
 
NC_010814  Glov_0844  restriction endonuclease S subunits-like protein  25.52 
 
 
386 aa  73.6  0.00000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3569  restriction modification system DNA specificity domain  29.46 
 
 
395 aa  72.8  0.00000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.0185936  n/a   
 
 
-
 
NC_008740  Maqu_3382  restriction modification system DNA specificity subunit  29.06 
 
 
485 aa  71.6  0.00000000003  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2978  restriction modification system DNA specificity domain protein  30.37 
 
 
194 aa  72  0.00000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_0845  restriction modification system DNA specificity domain protein  22.57 
 
 
495 aa  71.6  0.00000000004  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.31571e-19 
 
 
-
 
NC_011663  Sbal223_4189  restriction modification system DNA specificity domain protein  24.86 
 
 
401 aa  70.9  0.00000000006  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0504  restriction modification system DNA specificity domain protein  26.84 
 
 
408 aa  70.5  0.00000000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  26.45 
 
 
422 aa  69.7  0.0000000001  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  27.59 
 
 
402 aa  69.7  0.0000000001  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_009943  Dole_2093  restriction modification system DNA specificity subunit  24.14 
 
 
477 aa  68.9  0.0000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3515  restriction modification system DNA specificity domain  26.35 
 
 
514 aa  68.6  0.0000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3533  Type I restriction-modification system methyltransferase subunit-like protein  53.97 
 
 
86 aa  67.4  0.0000000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  decreased coverage  0.000840506  normal 
 
 
-
 
NC_010718  Nther_1991  restriction modification system DNA specificity domain  20.92 
 
 
490 aa  67.4  0.0000000006  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.120232  normal  0.112136 
 
 
-
 
NC_007355  Mbar_A3272  type I restriction-modification system specificity subunit  25.71 
 
 
492 aa  66.6  0.000000001  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.425878  normal  0.243207 
 
 
-
 
NC_009784  VIBHAR_05614  type I restriction-modification system S subunit  28.51 
 
 
432 aa  66.6  0.000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_0390  restriction modification system DNA specificity domain protein  27.45 
 
 
642 aa  64.7  0.000000004  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.0000219621 
 
 
-
 
NC_012794  GWCH70_3443  restriction modification system DNA specificity domain protein  21.51 
 
 
445 aa  64.3  0.000000006  Geobacillus sp. WCH70  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  26.23 
 
 
427 aa  62.8  0.00000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_007908  Rfer_0030  restriction modification system DNA specificity subunit  28.45 
 
 
447 aa  62.8  0.00000002  Rhodoferax ferrireducens T118  Bacteria  normal  0.539395  n/a   
 
 
-
 
NC_008761  Pnap_4778  restriction modification system DNA specificity subunit  27.27 
 
 
415 aa  62.4  0.00000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.16943  normal 
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  23.5 
 
 
453 aa  62.4  0.00000002  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_010581  Bind_2673  restriction modification system DNA specificity subunit  24.52 
 
 
415 aa  62.4  0.00000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.574489 
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  30.7 
 
 
419 aa  62.4  0.00000002  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_009801  EcE24377A_0287  type I restriction modification DNA specificity domain-containing protein  27.18 
 
 
471 aa  61.6  0.00000003  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3649  restriction modification system DNA specificity domain protein  27.01 
 
 
464 aa  61.2  0.00000005  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  27.78 
 
 
456 aa  60.8  0.00000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0030  restriction modification system DNA specificity subunit  25.67 
 
 
435 aa  60.1  0.0000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.534213  n/a   
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  25.25 
 
 
429 aa  60.1  0.0000001  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_02076  hypothetical protein  34.78 
 
 
292 aa  59.7  0.0000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0268  restriction endonuclease S subunits  23.42 
 
 
444 aa  59.3  0.0000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.277222  normal 
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  26.95 
 
 
422 aa  59.3  0.0000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  26.94 
 
 
456 aa  58.9  0.0000002  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  24.73 
 
 
460 aa  58.5  0.0000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  24.72 
 
 
417 aa  58.9  0.0000003  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_008639  Cpha266_0895  N-6 DNA methylase  24.09 
 
 
834 aa  58.2  0.0000004  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2976  restriction modification system DNA specificity domain protein  20.95 
 
 
238 aa  57.8  0.0000006  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>