More than 300 homologs were found in PanDaTox collection
for query gene RPB_3150 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_3150  Crp/FNR family transcriptional regulator  100 
 
 
252 aa  514  1.0000000000000001e-145  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0837  transcriptional regulator, Crp/Fnr family  70.56 
 
 
234 aa  332  3e-90  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  67.69 
 
 
240 aa  326  3e-88  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011887  Mnod_8112  transcriptional regulator, Crp/Fnr family  49.78 
 
 
229 aa  219  3e-56  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  39.53 
 
 
231 aa  174  9e-43  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  38.94 
 
 
231 aa  172  5e-42  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  40.67 
 
 
236 aa  164  2.0000000000000002e-39  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  38.43 
 
 
231 aa  162  5.0000000000000005e-39  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  38.43 
 
 
231 aa  162  5.0000000000000005e-39  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  43.41 
 
 
231 aa  159  4e-38  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  40.67 
 
 
240 aa  159  5e-38  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  39.81 
 
 
236 aa  157  2e-37  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  40.34 
 
 
239 aa  156  4e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  40.95 
 
 
236 aa  155  5.0000000000000005e-37  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  36.74 
 
 
232 aa  149  4e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  38.14 
 
 
257 aa  149  5e-35  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  36.11 
 
 
233 aa  144  2e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  36.11 
 
 
233 aa  144  2e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  40.22 
 
 
234 aa  144  2e-33  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  38.38 
 
 
233 aa  141  8e-33  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2417  cyclic nucleotide-binding protein  33.2 
 
 
250 aa  141  9.999999999999999e-33  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.034588  normal  0.0382931 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  35.19 
 
 
233 aa  140  3e-32  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2812  Crp/FNR family transcriptional regulator  32.88 
 
 
243 aa  139  3.9999999999999997e-32  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1070  Crp/FNR family transcriptional regulator  35 
 
 
235 aa  139  4.999999999999999e-32  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.105875  normal 
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  34.5 
 
 
232 aa  135  7.000000000000001e-31  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  33.5 
 
 
232 aa  131  1.0000000000000001e-29  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  35.71 
 
 
261 aa  124  1e-27  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_008554  Sfum_2941  Crp/FNR family transcriptional regulator  29.86 
 
 
235 aa  123  2e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  30.84 
 
 
249 aa  114  2.0000000000000002e-24  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  32.3 
 
 
257 aa  108  1e-22  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_009523  RoseRS_0595  CRP/FNR family transcriptional regulator  32 
 
 
228 aa  107  2e-22  Roseiflexus sp. RS-1  Bacteria  normal  0.130469  unclonable  0.00000708114 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  31.31 
 
 
227 aa  103  2e-21  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  30 
 
 
227 aa  102  6e-21  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  25.94 
 
 
219 aa  99.4  5e-20  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  25.68 
 
 
243 aa  99  7e-20  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_010730  SYO3AOP1_0394  transcriptional regulator, Crp/Fnr family  28.8 
 
 
237 aa  99  7e-20  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_009507  Swit_5204  CRP/FNR family transcriptional regulator  31.64 
 
 
261 aa  96.3  4e-19  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.26828 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  24.65 
 
 
225 aa  94  2e-18  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  23.11 
 
 
225 aa  93.6  3e-18  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  30.49 
 
 
239 aa  93.6  3e-18  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_009767  Rcas_3897  Crp/FNR family transcriptional regulator  24.87 
 
 
227 aa  92.8  5e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.280734  normal  0.887061 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  25.82 
 
 
227 aa  92.8  5e-18  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  28.74 
 
 
222 aa  91.3  1e-17  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  28.16 
 
 
231 aa  90.1  3e-17  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  26.48 
 
 
225 aa  89.7  4e-17  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  28.77 
 
 
228 aa  89.4  5e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_011830  Dhaf_3071  transcriptional regulator, Crp/Fnr family  28.78 
 
 
224 aa  88.6  8e-17  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00222127  n/a   
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  30.37 
 
 
261 aa  88.2  1e-16  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  25.11 
 
 
229 aa  88.2  1e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  28.7 
 
 
226 aa  87.8  1e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2668  transcriptional regulator, Crp/Fnr family  25.6 
 
 
225 aa  88.2  1e-16  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0967754  hitchhiker  0.000000348595 
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  30.69 
 
 
222 aa  87.8  2e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_011831  Cagg_2027  transcriptional regulator, Crp/Fnr family  26.07 
 
 
226 aa  86.3  4e-16  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  28.7 
 
 
226 aa  85.9  6e-16  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  24.88 
 
 
225 aa  85.5  8e-16  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_011126  HY04AAS1_0644  transcriptional regulator, Crp/Fnr family  26.15 
 
 
243 aa  84.7  0.000000000000001  Hydrogenobaculum sp. Y04AAS1  Bacteria  unclonable  0.0000000000000386152  n/a   
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  26.24 
 
 
230 aa  84.7  0.000000000000001  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  26.32 
 
 
239 aa  84.3  0.000000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  26.57 
 
 
223 aa  84.3  0.000000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  21.36 
 
 
231 aa  84.3  0.000000000000002  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  25.64 
 
 
239 aa  83.6  0.000000000000003  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  26.51 
 
 
254 aa  83.6  0.000000000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_008009  Acid345_0657  cyclic nucleotide-binding protein  24.52 
 
 
246 aa  83.6  0.000000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.418671  normal  0.417958 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  26.03 
 
 
236 aa  83.6  0.000000000000003  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  26.29 
 
 
352 aa  83.2  0.000000000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013093  Amir_5783  transcriptional regulator, Crp/Fnr family  28.1 
 
 
212 aa  82.8  0.000000000000005  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00268451  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  25.57 
 
 
236 aa  82.4  0.000000000000006  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_008009  Acid345_1422  cyclic nucleotide-binding protein  27.27 
 
 
238 aa  82  0.000000000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.309633  normal  0.119588 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  27.18 
 
 
226 aa  82  0.000000000000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  26.27 
 
 
225 aa  81.6  0.00000000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  26.03 
 
 
230 aa  81.6  0.00000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  23.71 
 
 
226 aa  81.6  0.00000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  27.15 
 
 
222 aa  80.9  0.00000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  31.73 
 
 
234 aa  80.5  0.00000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  23.11 
 
 
226 aa  80.9  0.00000000000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  25.96 
 
 
235 aa  80.9  0.00000000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  27.78 
 
 
267 aa  80.9  0.00000000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  26.27 
 
 
225 aa  80.1  0.00000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  30.05 
 
 
254 aa  79.7  0.00000000000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2076  Crp/FNR family transcriptional regulator  26.85 
 
 
234 aa  79.7  0.00000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.398696  n/a   
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  29.56 
 
 
250 aa  79  0.00000000000006  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  22.97 
 
 
227 aa  79  0.00000000000007  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  28.63 
 
 
235 aa  79  0.00000000000007  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  22.73 
 
 
227 aa  78.6  0.00000000000009  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  23.53 
 
 
226 aa  78.2  0.0000000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  24.42 
 
 
227 aa  77.8  0.0000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  28 
 
 
250 aa  78.2  0.0000000000001  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  27.27 
 
 
228 aa  77.4  0.0000000000002  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_013131  Caci_8335  putative transcriptional regulator, Crp/Fnr family  28.16 
 
 
209 aa  77.4  0.0000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.339186  normal 
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  28.64 
 
 
243 aa  77.8  0.0000000000002  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  25.13 
 
 
244 aa  77.8  0.0000000000002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  24.87 
 
 
250 aa  77  0.0000000000003  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  27.78 
 
 
250 aa  77  0.0000000000003  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  26.89 
 
 
227 aa  76.6  0.0000000000003  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  24.87 
 
 
249 aa  76.3  0.0000000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  26.7 
 
 
248 aa  76.6  0.0000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  27.06 
 
 
222 aa  76.6  0.0000000000004  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  27.27 
 
 
250 aa  76.3  0.0000000000004  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  29.06 
 
 
248 aa  76.6  0.0000000000004  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  29.49 
 
 
228 aa  76.6  0.0000000000004  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
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