More than 300 homologs were found in PanDaTox collection
for query gene VIBHAR_06722 on replicon NC_009784
Organism: Vibrio harveyi ATCC BAA-1116



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009784  VIBHAR_06722  acetoacetate metabolism regulatory protein AtoC  100 
 
 
449 aa  926    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000815  C4-dicarboxylate transport transcriptional regulatory protein  87.53 
 
 
449 aa  825    Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_1135  C4-dicarboxylate transport transcriptional regulatory protein  68.54 
 
 
450 aa  636    Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2875  two component, sigma54 specific, Fis family transcriptional regulator  50.44 
 
 
457 aa  465  9.999999999999999e-131  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.0385307 
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  48.78 
 
 
446 aa  410  1e-113  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4692  two component, sigma54 specific, Fis family transcriptional regulator  47.53 
 
 
453 aa  403  1e-111  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0995721 
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  48.11 
 
 
446 aa  399  9.999999999999999e-111  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_007511  Bcep18194_B0306  two component, sigma54 specific, Fis family transcriptional regulator  46.86 
 
 
453 aa  396  1e-109  Burkholderia sp. 383  Bacteria  normal  0.794109  normal 
 
 
-
 
NC_010552  BamMC406_5221  two component, sigma54 specific, Fis family transcriptional regulator  47.31 
 
 
453 aa  392  1e-108  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_5345  two component, sigma54 specific, transcriptional regulator, Fis family  47.94 
 
 
455 aa  393  1e-108  Variovorax paradoxus S110  Bacteria  normal  0.464024  n/a   
 
 
-
 
NC_007973  Rmet_0588  Fis family transcriptional regulator  46.22 
 
 
458 aa  394  1e-108  Cupriavidus metallidurans CH34  Bacteria  normal  0.651672  normal 
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  48.55 
 
 
444 aa  392  1e-108  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_010515  Bcenmc03_4926  two component, sigma54 specific, Fis family transcriptional regulator  47.31 
 
 
453 aa  393  1e-108  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  48.66 
 
 
444 aa  391  1e-107  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  46.99 
 
 
442 aa  388  1e-107  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_007492  Pfl01_4540  two component, sigma-54 specific, Fis family transcriptional regulator  46.33 
 
 
442 aa  390  1e-107  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.203781  normal  0.155775 
 
 
-
 
NC_010086  Bmul_3388  two component, sigma54 specific, Fis family transcriptional regulator  46.98 
 
 
453 aa  390  1e-107  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3024  two component, sigma54 specific, Fis family transcriptional regulator  47.31 
 
 
453 aa  391  1e-107  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5669  two component, sigma54 specific, Fis family transcriptional regulator  47.73 
 
 
454 aa  390  1e-107  Burkholderia phymatum STM815  Bacteria  normal  0.946519  normal 
 
 
-
 
NC_010322  PputGB1_4410  two component, sigma54 specific, Fis family transcriptional regulator  47.77 
 
 
444 aa  390  1e-107  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5342  two component, sigma54 specific, Fis family transcriptional regulator  47.31 
 
 
453 aa  391  1e-107  Burkholderia cenocepacia HI2424  Bacteria  normal  0.71249  normal  0.508922 
 
 
-
 
NC_010501  PputW619_1042  two component, sigma54 specific, Fis family transcriptional regulator  47.1 
 
 
444 aa  388  1e-106  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4293  two component, sigma54 specific, Fis family transcriptional regulator  46.67 
 
 
448 aa  385  1e-106  Delftia acidovorans SPH-1  Bacteria  normal  0.475037  normal 
 
 
-
 
NC_007492  Pfl01_0287  two component, sigma-54 specific, Fis family transcriptional regulator  46.46 
 
 
462 aa  382  1e-105  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.378858 
 
 
-
 
NC_008463  PA14_72720  putative two-component response regulator  47.68 
 
 
447 aa  384  1e-105  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.269979  normal 
 
 
-
 
NC_009656  PSPA7_4050  putative two-component response regulator  45.9 
 
 
441 aa  379  1e-104  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_1066  two component, sigma54 specific, transcriptional regulator, Fis family  46.99 
 
 
442 aa  381  1e-104  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA3226  C4-dicarboxylate transport transcriptional regulatory protein  44.99 
 
 
451 aa  379  1e-104  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3995  helix-turn-helix, Fis-type  47.43 
 
 
444 aa  380  1e-104  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0385153 
 
 
-
 
NC_007347  Reut_A0275  helix-turn-helix, Fis-type  46.9 
 
 
441 aa  381  1e-104  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0642  C4-dicarboxylate transport transcriptional regulatory protein  44.99 
 
 
451 aa  379  1e-104  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A6213  two component, sigma54 specific, Fis family transcriptional regulator  45.21 
 
 
451 aa  380  1e-104  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_0478  C4-dicarboxylate transport transcriptional response regulator DctD  44.99 
 
 
451 aa  379  1e-104  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0458  C4-dicarboxylate transport transcriptional response regulator DctD  44.99 
 
 
451 aa  379  1e-104  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0201  C4-dicarboxylate transport transcriptional regulatory protein  44.99 
 
 
451 aa  379  1e-104  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1392  C4-dicarboxylate transport transcriptional regulatory protein  44.99 
 
 
451 aa  379  1e-104  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1107  two component, sigma54 specific, Fis family transcriptional regulator  46.77 
 
 
442 aa  380  1e-104  Pseudomonas putida F1  Bacteria  normal  normal  0.248973 
 
 
-
 
NC_010501  PputW619_1095  two component, sigma54 specific, Fis family transcriptional regulator  46.67 
 
 
442 aa  381  1e-104  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_4338  two component, sigma54 specific, Fis family transcriptional regulator  45.01 
 
 
456 aa  381  1e-104  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009439  Pmen_4294  two component, sigma54 specific, Fis family transcriptional regulator  47.36 
 
 
461 aa  380  1e-104  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.595978 
 
 
-
 
NC_010322  PputGB1_4346  two component, sigma54 specific, Fis family transcriptional regulator  46.67 
 
 
442 aa  378  1e-104  Pseudomonas putida GB-1  Bacteria  normal  0.788839  normal 
 
 
-
 
NC_009080  BMA10247_2818  C4-dicarboxylate transport transcriptional regulatory protein  44.99 
 
 
451 aa  379  1e-104  Burkholderia mallei NCTC 10247  Bacteria  normal  0.896177  n/a   
 
 
-
 
NC_003295  RSc0332  C4-dicarboxylate transport response regulator transcription regulator protein  45.82 
 
 
438 aa  377  1e-103  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4176  sigma-54 dependent transcriptional regulator/response regulator  45.33 
 
 
442 aa  376  1e-103  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.999918  n/a   
 
 
-
 
NC_012856  Rpic12D_0194  two component, sigma54 specific, transcriptional regulator, Fis family  46.05 
 
 
438 aa  376  1e-103  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0392315 
 
 
-
 
NC_007347  Reut_A2669  two component, sigma54 specific, Fis family transcriptional regulator  44.8 
 
 
439 aa  377  1e-103  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0401  C4-dicarboxylate transport transcriptional regulatory protein  44.77 
 
 
451 aa  377  1e-103  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1516  C4-dicarboxylate transport transcriptional regulatory protein  43.97 
 
 
446 aa  376  1e-103  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004047  C4-dicarboxylate transport transcriptional regulatory protein  43.83 
 
 
445 aa  375  1e-103  Vibrio sp. Ex25  Bacteria  normal  0.114732  n/a   
 
 
-
 
NC_012560  Avin_03680  C4 dicarboxylate two-component response regulator, sigma54-dependent; DctD2  45.85 
 
 
461 aa  372  1e-102  Azotobacter vinelandii DJ  Bacteria  normal  0.0105245  n/a   
 
 
-
 
NC_009656  PSPA7_6313  putative two-component response regulator  47.02 
 
 
447 aa  373  1e-102  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_010682  Rpic_0188  two component, sigma54 specific, transcriptional regulator, Fis family  45.82 
 
 
438 aa  373  1e-102  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3913  helix-turn-helix, Fis-type  45.56 
 
 
442 aa  374  1e-102  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.289305  normal  0.253976 
 
 
-
 
NC_010084  Bmul_0432  two component, sigma54 specific, Fis family transcriptional regulator  44.84 
 
 
450 aa  373  1e-102  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_46990  putative two-component response regulator  48.74 
 
 
425 aa  372  1e-102  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0103448  normal  0.161007 
 
 
-
 
NC_004578  PSPTO_4292  sigma-54 dependent transcriptional regulator/response regulator  45.64 
 
 
444 aa  371  1e-101  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2788  two component, sigma54 specific, Fis family transcriptional regulator  43.88 
 
 
451 aa  370  1e-101  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1249  two component, sigma54 specific, Fis family transcriptional regulator  45.76 
 
 
452 aa  370  1e-101  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1208  two component, sigma54 specific, transcriptional regulator, Fis family  45.8 
 
 
458 aa  370  1e-101  Methylobacterium populi BJ001  Bacteria  normal  0.320827  normal  0.373488 
 
 
-
 
NC_007908  Rfer_3453  two component, sigma54 specific, Fis family transcriptional regulator  44.72 
 
 
445 aa  368  1e-101  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0230  Fis family transcriptional regulator  44.57 
 
 
444 aa  369  1e-101  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2257  two component, sigma54 specific, Fis family transcriptional regulator  44.32 
 
 
450 aa  370  1e-101  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0227  two component, sigma54 specific, Fis family transcriptional regulator  44.79 
 
 
452 aa  370  1e-101  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2882  two component, sigma54 specific, Fis family transcriptional regulator  44.59 
 
 
450 aa  370  1e-101  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.486122  normal 
 
 
-
 
NC_008390  Bamb_2926  two component, sigma54 specific, Fis family transcriptional regulator  43.88 
 
 
451 aa  370  1e-101  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2871  two component, sigma54 specific, Fis family transcriptional regulator  44.32 
 
 
450 aa  370  1e-101  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0598017  n/a   
 
 
-
 
NC_009620  Smed_4176  two component, sigma54 specific, Fis family transcriptional regulator  42.35 
 
 
452 aa  365  1e-100  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.280959 
 
 
-
 
NC_009654  Mmwyl1_0915  two component, sigma54 specific, Fis family transcriptional regulator  43.83 
 
 
452 aa  368  1e-100  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0477  two component, sigma54 specific, Fis family transcriptional regulator  45.21 
 
 
443 aa  366  1e-100  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1258  sigma-54 factor interaction domain-containing protein  44.79 
 
 
451 aa  365  1e-100  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.438925 
 
 
-
 
NC_008463  PA14_68250  two-component response regulator  45.76 
 
 
462 aa  367  1e-100  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.371358  normal  0.144717 
 
 
-
 
NC_010681  Bphyt_0520  two component, sigma54 specific, transcriptional regulator, Fis family  44.77 
 
 
450 aa  366  1e-100  Burkholderia phytofirmans PsJN  Bacteria  normal  0.150741  normal 
 
 
-
 
NC_011757  Mchl_1419  two component, sigma54 specific, transcriptional regulator, Fis family  44.79 
 
 
451 aa  365  1e-100  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.895196 
 
 
-
 
NC_009656  PSPA7_5905  two-component response regulator  45.31 
 
 
462 aa  365  1e-99  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  42.41 
 
 
461 aa  364  1e-99  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp0009  response regulator of the C4-dicarboxylate transport two-component regulatory system transcription regulator protein  45.18 
 
 
454 aa  363  3e-99  Ralstonia solanacearum GMI1000  Bacteria  normal  0.313287  normal 
 
 
-
 
NC_008709  Ping_0712  C4-dicarboxylate transport sigma-54 regulatory protein  42.79 
 
 
446 aa  363  3e-99  Psychromonas ingrahamii 37  Bacteria  normal  0.212594  normal 
 
 
-
 
NC_007951  Bxe_A4195  two component, sigma-54 specific, Fis family transcriptional regulator  44.2 
 
 
450 aa  362  9e-99  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.314648 
 
 
-
 
NC_010501  PputW619_4947  two component, sigma54 specific, Fis family transcriptional regulator  46.52 
 
 
469 aa  362  9e-99  Pseudomonas putida W619  Bacteria  normal  0.669147  hitchhiker  0.0000241398 
 
 
-
 
NC_011369  Rleg2_2719  two component, sigma54 specific, transcriptional regulator, Fis family  44.3 
 
 
448 aa  362  1e-98  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2980  two component, sigma54 specific, transcriptional regulator, Fis family  43.96 
 
 
448 aa  360  2e-98  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0718905 
 
 
-
 
NC_009668  Oant_3478  two component, sigma54 specific, Fis family transcriptional regulator  43.11 
 
 
450 aa  361  2e-98  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0263  two component, sigma54 specific, transcriptional regulator, Fis family  44.89 
 
 
468 aa  358  8e-98  Pseudomonas putida KT2440  Bacteria  normal  0.513605  normal  0.0177919 
 
 
-
 
NC_009512  Pput_0278  two component, sigma54 specific, Fis family transcriptional regulator  44.89 
 
 
468 aa  358  9.999999999999999e-98  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0288  two component, sigma54 specific, Fis family transcriptional regulator  44.89 
 
 
468 aa  358  9.999999999999999e-98  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_3789  two component, sigma54 specific, transcriptional regulator, Fis family  44.2 
 
 
452 aa  357  1.9999999999999998e-97  Ralstonia pickettii 12J  Bacteria  normal  normal  0.146089 
 
 
-
 
NC_012857  Rpic12D_3902  two component, sigma54 specific, transcriptional regulator, Fis family  44.2 
 
 
452 aa  357  1.9999999999999998e-97  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4048  two component, sigma54 specific, Fis family transcriptional regulator  44.27 
 
 
459 aa  356  5.999999999999999e-97  Xanthobacter autotrophicus Py2  Bacteria  normal  0.650008  normal  0.353812 
 
 
-
 
NC_010524  Lcho_2681  two component, sigma54 specific, Fis family transcriptional regulator  43.65 
 
 
444 aa  355  7.999999999999999e-97  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.818562 
 
 
-
 
NC_007005  Psyr_4938  helix-turn-helix, Fis-type  43.98 
 
 
463 aa  355  8.999999999999999e-97  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4770  two component, sigma54 specific, Fis family transcriptional regulator  43.46 
 
 
446 aa  355  1e-96  Methylobacterium sp. 4-46  Bacteria  normal  0.133057  normal  0.593625 
 
 
-
 
NC_004578  PSPTO_5399  sigma-54 dependent transcriptional regulator/response regulator  43.61 
 
 
461 aa  353  2.9999999999999997e-96  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3285  two component, sigma54 specific, transcriptional regulator, Fis family  42 
 
 
450 aa  352  5e-96  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3936  two component, sigma54 specific, Fis family transcriptional regulator  45.1 
 
 
441 aa  351  1e-95  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1442  two component, sigma54 specific, Fis family transcriptional regulator  42.28 
 
 
455 aa  350  4e-95  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2148  helix-turn-helix, Fis-type  44.57 
 
 
442 aa  348  8e-95  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.383237 
 
 
-
 
NC_010505  Mrad2831_0369  two component, sigma54 specific, Fis family transcriptional regulator  43.46 
 
 
451 aa  348  9e-95  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3260  two component, sigma54 specific, transcriptional regulator, Fis family  41.78 
 
 
450 aa  348  1e-94  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3061  sigma-54 factor interaction domain-containing protein  41.56 
 
 
450 aa  346  4e-94  Methylobacterium extorquens PA1  Bacteria  normal  0.305462  normal 
 
 
-
 
NC_008740  Maqu_2347  two component, sigma54 specific, Fis family transcriptional regulator  41.24 
 
 
450 aa  346  6e-94  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
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