Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0288 |
Symbol | |
ID | 5867985 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 334856 |
End bp | 336262 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641545368 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_001666537 |
Protein GI | 167031306 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACCG AGACACTGAT CGACAGCCGA GCCCAGGTCA TCCTGGTCGA CGATGCCCCC CACCTGCGCC AGGCCTTGAG CCAGACCCTG GACCTGGCAG GGCTCAAGGT AGTCGCCTTG GCCGATGCCC AAGGCCTGGC CGAGCGAATC GAGGCCGACT GGCCGGGCGT GGTGGTCAGC GACATCCGCA TGCCCGGTAT CGATGGCTTG CAGTTGCTGG AACAACTGCA CAGCCGCGAC AGCGAACTAC CGGTGCTGCT GATTACCGGC CATGGCGATG TGCCGCTGGC AGTGCAGGCA ATGCGCGCCG GGGCTTATGA CTTCCTGGAA AAGCCGTTTG CCACGGACGC CCTGCTCGAC AGCGTGCGCC GCGCCCTGGC CCTGCGCCGC CTGGTGCTGG ACAACCGCAG CCTGCGCCTG GCGCTAAGCG ACCGTCAGCA GCTGGCCACC CGCCTGGTGG GCCATTCACC GGCCATGCAG CGCCTGCGCG AGCAAATCGG CGCCTTGGCC GGCACCCGTG CCGATGTGCT GATTTTGGGC GAAACCGGCG CAGGCAAAGA GGTGGTGGCC CGTGCCCTGC ACGACCTTTC CAGCCGCCGC GACGGCCCGT TCGTGGCGAT CAACGCGGGG GCACTGGCCG AGTCGGTGGT CGAAAGCGAG CTGTTCGGCC ATGAGCCCGG CGCGTTCACC GGCGCGCAGA AGCGGCGCAT CGGCAAGTTC GAATTTGCCA ACGGCGGCAC GCTGTTTCTC GATGAAATCG AGAGCATGAG CCTGGATGTT CAGGTGAAAC TGCTGCGCAT GCTGCAAGAG CGGGTGGTCG AACGCCTGGG CGGCAACCAG CTTATCCCGC TGGATATCCG CATCATCGCT GCCACCAAGG AAGACCTGCG TCAGGCCGCA GACCAGGGGC GCTTCCGCGC CGACTTGTAT TACCGCCTTA ACGTCGCACC GCTGCGTATT CCGCCGCTGC GCGAACGCGG CGATGACATT CTGGTGTTGT TCCAGCATTT CGCCGATGCC GCCAGCCAGC GACATGGCCT GTCACCGCAC GCGCTGCAGC CAGCACAACG AGCCCTGCTG CTGCGTCACG ACTGGCCGGG TAATGTGCGC GAACTGCAGA ACGCCGCCGA GCGCTTCGCC CTTGGCCTGG AACTGGCCCT GGATGGCCAG GCACCTCCGG CAGCAGCACC CGCAGCACCA TTGCTGAGCG GCAACCTCAG CGAGCAGGTG GAGCAGTTCG AACGCTCGCT GATCGCTGCC GAACTGGCCC AGCCACACAG CTCCATGCGC AGCTTGGCCG AGGCGCTGGG CATCCCCCGC AAAACCCTGC ACGACAAACT GCGCAAGCAT GGCTTGAACT TCGACGGAGG CAGTGGCGGG CATGACGAAC AAGAGGACAA TCGTTAA
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Protein sequence | MTTETLIDSR AQVILVDDAP HLRQALSQTL DLAGLKVVAL ADAQGLAERI EADWPGVVVS DIRMPGIDGL QLLEQLHSRD SELPVLLITG HGDVPLAVQA MRAGAYDFLE KPFATDALLD SVRRALALRR LVLDNRSLRL ALSDRQQLAT RLVGHSPAMQ RLREQIGALA GTRADVLILG ETGAGKEVVA RALHDLSSRR DGPFVAINAG ALAESVVESE LFGHEPGAFT GAQKRRIGKF EFANGGTLFL DEIESMSLDV QVKLLRMLQE RVVERLGGNQ LIPLDIRIIA ATKEDLRQAA DQGRFRADLY YRLNVAPLRI PPLRERGDDI LVLFQHFADA ASQRHGLSPH ALQPAQRALL LRHDWPGNVR ELQNAAERFA LGLELALDGQ APPAAAPAAP LLSGNLSEQV EQFERSLIAA ELAQPHSSMR SLAEALGIPR KTLHDKLRKH GLNFDGGSGG HDEQEDNR
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