| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3453 |
|---|
| Symbol | |
|---|
| ID | 3962560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3841984 |
|---|
| End bp | 3843321 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637918271 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_524691 |
|---|
| Protein GI | 89902220 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAA TCTTCCAGGT ACTGGTGGTC GAGGACGACC CGGACGTCCG CCTGGGCTGC
GAACAGGCCC TGCAGCTGGA AGACATTCCG GCCAGCGGCC TGGACAGCGC CGAAAAGGCC
CTGCGCCGCG TCACGCGCGA TTTTCCCGGC GTGGTCGTGA GCGACATCCG ACTGCCGGGT
ATGGACGGCA TGGCCCTACT CAAGGAACTG CGGGCCATTG ACCCGGATCT GCCGGTCGTG
CTGATTACCG GCCACGGCGA CGTGTCCCTG GCGGTCCAGG CCATGAAGGA CGGCGCCCAC
GACTTTATCG AAAAGCCCTT CTCCCCGGAC TACCTGGTGG AAGTGGTGCG CCGGGCCCTA
GACAAACGCC GCCTGACCCT GGAAGTGCGT CAACTGCGCG CCCGTCTGAG CAACCGAGAC
CAACTTGAAG CCAAGCTCCT CGGCCGCTCG CCGGCCATGG CCCGGGTGCG GCAACTGGTG
GCTGACCTAG GCAACAGCGC TGCCGACATT CTCATCCAGG GTGAAACTGG CACCGGCAAG
GAACTGGTGG CCCGCTGCCT GCACGAAGCC GGGCCGAGTC GCTCCGGCCA CTTCGTCGCC
ATCAACTGCG GCGGCCTGCC AGAGACCCTG TTCGAAAGCG AAATATTTGG CCACGAGGCA
GGGGCTTATA CCGGTGCCGG CAAGCGCCGA ATTGGAAAGA TCGAGTACGC TAGCGGTGGC
ACCTTGTTGC TCGACGAAAT CGAGTCGATG CCTCTCAGCA TGCAGATCAA GCTCCTGCGG
GTGCTGCAGG AACGCAGCCT GGAACGGCTG GGCTCCAACT CCCCCATCCC GGTGAACTGC
CGGGTTATCG CCGCAACCAA GGTGGACCTG AAGGAGCTAT CGGACCAAGG CCGCTTCCGC
GCCGACCTCT ACTACCGGCT CAATGCCGTC ACTTTACAGC TGCCGCCCCT GCGCGAGCGG
CGGGAAGATA TTCCCCTCAT GTTCGAGCAC TTCCTGCTGC AAGGTGCTGC CCGTCATCAG
AGACCGGTGT CTGCAGCCGA GCCACCCCGT CAGGGCCGCC TGATGGCTTA CGACTGGCCA
GGCAATGTGC GGGAACTGCG AAACGTGGCC GACCGCTGGG TGCTGGGTAT TGAGCTCGGT
TTCCCGCCCT TCGCAGCCGA GGTTTCCGCC GGTCCCCGGC AACTGGCGGA GACCGTGGAA
GCCTTCGAGA GCGCGCTCAT TGCGGAAGCC CTGAGCCGAA ACGGAGGTAG CCTGGCGCGT
ACTGCCGAAG CCGTGGGTAT GGCCAAGACC ACGCTGCACG ACAAAATCAG AAAGTACCGT
TTAGGGAAGT TGAATTGA
|
|---|
| Protein sequence | MTEIFQVLVV EDDPDVRLGC EQALQLEDIP ASGLDSAEKA LRRVTRDFPG VVVSDIRLPG
MDGMALLKEL RAIDPDLPVV LITGHGDVSL AVQAMKDGAH DFIEKPFSPD YLVEVVRRAL
DKRRLTLEVR QLRARLSNRD QLEAKLLGRS PAMARVRQLV ADLGNSAADI LIQGETGTGK
ELVARCLHEA GPSRSGHFVA INCGGLPETL FESEIFGHEA GAYTGAGKRR IGKIEYASGG
TLLLDEIESM PLSMQIKLLR VLQERSLERL GSNSPIPVNC RVIAATKVDL KELSDQGRFR
ADLYYRLNAV TLQLPPLRER REDIPLMFEH FLLQGAARHQ RPVSAAEPPR QGRLMAYDWP
GNVRELRNVA DRWVLGIELG FPPFAAEVSA GPRQLAETVE AFESALIAEA LSRNGGSLAR
TAEAVGMAKT TLHDKIRKYR LGKLN
|
|---|
| |