Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4947 |
Symbol | |
ID | 6113939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 5467258 |
End bp | 5468667 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641624761 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_001751792 |
Protein GI | 170724104 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.669147 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0000241398 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGACCCCCG AGATACAGAT CGACAGCCAG GCCCAGGTGC TGCTGGTCGA CGACGACCCA CACCTGCGCC AGGCCTTGAG CCAAACCCTC GACCTGGCGG GGCTCAAGGT GGTTGCCCTG GCCGACGCCC AAGGCCTGGC CGAGCGCCTG GAGCCCGACT GGCCTGGCGT GGTCGTCAGC GACATCCGCA TGCCCGGCAT CGATGGCTTG CAACTGCTCG AACAATTGCA CGGGCGTGAC AACGAACTGC CAGTGCTGCT GATCACCGGC CACGGCGATG TGCCCCTGGC GGTGCAGGCC ATGCGCGCTG GCGCCTACGA CTTCCTTGAA AAGCCCTTTG CCAGTGAAGC TCTGCTCGAC AGCGTGCGCC GCGCGCTGGC CCTGCGCCGG CTGGTGCTCG ACAACCGCAG CCTGCGCCTG GCCTTGAGCG ACCGCCAGCA ACTGGCCACC CGCCTGGTCG GCCATTCGCC CGCCATGCAG CGCCTGCGCG AACAGATCGG TGCCCTGGCC GGTACCCGCG CCGACGTGCT CATCCTCGGC GAAACCGGCG CTGGCAAGGA GGTGGTGGCC CGCGCCCTGC ACGATCTGTC CAGCCGCCGC GATGGGCCAT TCGTGGCCAT CAATGCCGGC GCACTGGCCG AGTCGGTGGT CGAAAGCGAG CTGTTCGGCC ATGAGCCCGG CGCTTTCACC GGCGCGCAGA AGCGCCGCAT CGGCAAGTTC GAGTTCGCCA ATGGCGGCAC GCTGTTCCTC GACGAAATCG AAAGCATGAG CCTGGACGTG CAGGTGAAGT TGCTGCGCCT GCTGCAGGAG CGAGTAGTCG AGCGCCTGGG CGGCAACCAG CTGATCCCGC TGGACATCCG CATCATTGCC GCAACCAAGG AGGACCTGCG CCAGTCCGCC GACCAAGGCC GCTTCCGTGC CGACCTTTAC TACCGCCTGA ACGTGGCACC GCTGCGCATC CCGCCGCTGC GCGAGCGAGG GGATGACATC CTGGTGCTGT TCCAGCATTT CGCCGATACC GCCAGCCAAC GCCACGGCTT GCCACCGCAA ACCCTGCAGC CGGCGCACCG GGCCATGCTG CTGCGCCATG CCTGGCCAGG CAATGTGCGC GAACTGCAAA ACGCCGCCGA GCGTTTCGCC CTTGGCCTGG AGCTGGCGCT CGATCACCAG GCCCCCGCTG CCGCAGCACC CACAGCCCCG CTTCAGCTGG GCAACCTCAG CGAACAGGTA GAGCAGTTCG AGCGTTCGTT GATTGCCGCC GAACTGGGCC AGCCGCACAG CTCCATGCGC AGCCTGGCCG AGGCACTCGG TATCCCGCGC AAAACCTTGC ATGACAAGCT GCGCAAGCAC GGCCTCAGTT TTGACGGTGG CCACAGCGGG CCTGACGACC ACGAGGACAA CCGCCCATGA
|
Protein sequence | MTPEIQIDSQ AQVLLVDDDP HLRQALSQTL DLAGLKVVAL ADAQGLAERL EPDWPGVVVS DIRMPGIDGL QLLEQLHGRD NELPVLLITG HGDVPLAVQA MRAGAYDFLE KPFASEALLD SVRRALALRR LVLDNRSLRL ALSDRQQLAT RLVGHSPAMQ RLREQIGALA GTRADVLILG ETGAGKEVVA RALHDLSSRR DGPFVAINAG ALAESVVESE LFGHEPGAFT GAQKRRIGKF EFANGGTLFL DEIESMSLDV QVKLLRLLQE RVVERLGGNQ LIPLDIRIIA ATKEDLRQSA DQGRFRADLY YRLNVAPLRI PPLRERGDDI LVLFQHFADT ASQRHGLPPQ TLQPAHRAML LRHAWPGNVR ELQNAAERFA LGLELALDHQ APAAAAPTAP LQLGNLSEQV EQFERSLIAA ELGQPHSSMR SLAEALGIPR KTLHDKLRKH GLSFDGGHSG PDDHEDNRP
|
| |