Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4176 |
Symbol | |
ID | 1185856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4704777 |
End bp | 4706105 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637395522 |
Product | sigma-54 dependent transcriptional regulator/response regulator |
Protein accession | NP_793937 |
Protein GI | 28871318 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.999918 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCATCA ACAGCGAACT CACTGTCCTG ATCGTCGAAG ACGACCCGCA CGTATTGCTG GGCTGCCAGC AGGCGCTGGC GCTGGAAGAC ATTGCCAGCG AAGGCGTATC AAGCGCCGAG GATGCCCTCA AGCGCATCGG CGACAATTTC GCCGGCATTG TCATCAGCGA CATCCGCTTG CCGGGCATCG ACGGGCTGGA GCTGCTGAGC CGTCTCAAGG CACGCGACAG CAGCCTGCCG GTGGTGCTGA TTACCGGGCA CGGCGACATC ACCATGGCCG TCAACGCGAT GCGCGACGGC GCCTACGATT TCATGGAAAA ACCCTTCTCT CCCGAGCGAC TGGTCGAGGT CACGCGGCGC GCTCTGGAGC AACGCGGGCT GGCGCGGGAG GTCTGGTCGC TGCGCAAGCA ACTGGCTGAG CGTGACTCGC TGGAAGGCCG GATCATCGGT CGCTCGCCAG TCATGCAAAA CCTGCGCGCA TTGATTGCCA ACGTCGCCGA CACTTCAGCC AACGTGCTGA TTGAAGGCGA AACCGGCACC GGCAAGGAAC TGGTCGCGCG CTGCCTGCAT GATTTCAGTC GGCGCAAGGA CAGCCAGTTC GTGGCCCTCA ACTGTGGCGG TCTGGCGGAA AGCCTGTTCG AATCGGAAAT CTTCGGTCAC GAAGCCAACG CGTTCACCGG CGCAGGCAAG CGGCGCATCG GCAAGATCGA GCACGCCCAC GAGGGCACGC TGTTTCTCGA CGAAGTGGAA AGCATGCCGA TCAATCTGCA GATCAAGTTG TTGCGCGTGC TGCAGGAGCG AACCCTTGAG CGGCTGGGCT CGAACCAGAG CGTTGCGGTA GATTGCCGGG TAATTGCAGC GACCAAGTCT GATCTCAATG CACTGGGCAA GACCAATCAG TTCCGTAGCG ACCTGTATTA CCGCCTCAAC GTGGTCACTC TGGAATTGCC GCCGCTGCGC GAGCGTCGCG AGGACATTCT GCAATTGTTC GAACATTTTC TGCAGTTGTC ATCATTGCGC TTCGACCGCG AGCCGCCGGC GCTGGATCGG CAGACCAGCT CAAGCCTGTT AAGCCACGAC TGGCCGGGTA ACGTGCGCGA ACTGCGCAAC GTTGCAGAGC GCTTTGCGCT GGGTCTGCCG GCGTTCAAGC AGGCAGGCAC GGTCAGTGAA AACCAGAGCC TGGGGTTTGC CGAGGCGGTT GAAGCCTTTG AACGATCACT GCTCAGCGAA GCCCTGCAAC GCAGCGGCGG CAACCTCAGC CAGGCCAGTC AGGAACTGGG CATGGCCAAG ACCACACTGT TTGACAAGGT CAAGAAATAT GGGCTTTGA
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Protein sequence | MSINSELTVL IVEDDPHVLL GCQQALALED IASEGVSSAE DALKRIGDNF AGIVISDIRL PGIDGLELLS RLKARDSSLP VVLITGHGDI TMAVNAMRDG AYDFMEKPFS PERLVEVTRR ALEQRGLARE VWSLRKQLAE RDSLEGRIIG RSPVMQNLRA LIANVADTSA NVLIEGETGT GKELVARCLH DFSRRKDSQF VALNCGGLAE SLFESEIFGH EANAFTGAGK RRIGKIEHAH EGTLFLDEVE SMPINLQIKL LRVLQERTLE RLGSNQSVAV DCRVIAATKS DLNALGKTNQ FRSDLYYRLN VVTLELPPLR ERREDILQLF EHFLQLSSLR FDREPPALDR QTSSSLLSHD WPGNVRELRN VAERFALGLP AFKQAGTVSE NQSLGFAEAV EAFERSLLSE ALQRSGGNLS QASQELGMAK TTLFDKVKKY GL
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