Gene PSPTO_4176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4176 
Symbol 
ID1185856 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4704777 
End bp4706105 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content61% 
IMG OID637395522 
Productsigma-54 dependent transcriptional regulator/response regulator 
Protein accessionNP_793937 
Protein GI28871318 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.999918 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCATCA ACAGCGAACT CACTGTCCTG ATCGTCGAAG ACGACCCGCA CGTATTGCTG 
GGCTGCCAGC AGGCGCTGGC GCTGGAAGAC ATTGCCAGCG AAGGCGTATC AAGCGCCGAG
GATGCCCTCA AGCGCATCGG CGACAATTTC GCCGGCATTG TCATCAGCGA CATCCGCTTG
CCGGGCATCG ACGGGCTGGA GCTGCTGAGC CGTCTCAAGG CACGCGACAG CAGCCTGCCG
GTGGTGCTGA TTACCGGGCA CGGCGACATC ACCATGGCCG TCAACGCGAT GCGCGACGGC
GCCTACGATT TCATGGAAAA ACCCTTCTCT CCCGAGCGAC TGGTCGAGGT CACGCGGCGC
GCTCTGGAGC AACGCGGGCT GGCGCGGGAG GTCTGGTCGC TGCGCAAGCA ACTGGCTGAG
CGTGACTCGC TGGAAGGCCG GATCATCGGT CGCTCGCCAG TCATGCAAAA CCTGCGCGCA
TTGATTGCCA ACGTCGCCGA CACTTCAGCC AACGTGCTGA TTGAAGGCGA AACCGGCACC
GGCAAGGAAC TGGTCGCGCG CTGCCTGCAT GATTTCAGTC GGCGCAAGGA CAGCCAGTTC
GTGGCCCTCA ACTGTGGCGG TCTGGCGGAA AGCCTGTTCG AATCGGAAAT CTTCGGTCAC
GAAGCCAACG CGTTCACCGG CGCAGGCAAG CGGCGCATCG GCAAGATCGA GCACGCCCAC
GAGGGCACGC TGTTTCTCGA CGAAGTGGAA AGCATGCCGA TCAATCTGCA GATCAAGTTG
TTGCGCGTGC TGCAGGAGCG AACCCTTGAG CGGCTGGGCT CGAACCAGAG CGTTGCGGTA
GATTGCCGGG TAATTGCAGC GACCAAGTCT GATCTCAATG CACTGGGCAA GACCAATCAG
TTCCGTAGCG ACCTGTATTA CCGCCTCAAC GTGGTCACTC TGGAATTGCC GCCGCTGCGC
GAGCGTCGCG AGGACATTCT GCAATTGTTC GAACATTTTC TGCAGTTGTC ATCATTGCGC
TTCGACCGCG AGCCGCCGGC GCTGGATCGG CAGACCAGCT CAAGCCTGTT AAGCCACGAC
TGGCCGGGTA ACGTGCGCGA ACTGCGCAAC GTTGCAGAGC GCTTTGCGCT GGGTCTGCCG
GCGTTCAAGC AGGCAGGCAC GGTCAGTGAA AACCAGAGCC TGGGGTTTGC CGAGGCGGTT
GAAGCCTTTG AACGATCACT GCTCAGCGAA GCCCTGCAAC GCAGCGGCGG CAACCTCAGC
CAGGCCAGTC AGGAACTGGG CATGGCCAAG ACCACACTGT TTGACAAGGT CAAGAAATAT
GGGCTTTGA
 
Protein sequence
MSINSELTVL IVEDDPHVLL GCQQALALED IASEGVSSAE DALKRIGDNF AGIVISDIRL 
PGIDGLELLS RLKARDSSLP VVLITGHGDI TMAVNAMRDG AYDFMEKPFS PERLVEVTRR
ALEQRGLARE VWSLRKQLAE RDSLEGRIIG RSPVMQNLRA LIANVADTSA NVLIEGETGT
GKELVARCLH DFSRRKDSQF VALNCGGLAE SLFESEIFGH EANAFTGAGK RRIGKIEHAH
EGTLFLDEVE SMPINLQIKL LRVLQERTLE RLGSNQSVAV DCRVIAATKS DLNALGKTNQ
FRSDLYYRLN VVTLELPPLR ERREDILQLF EHFLQLSSLR FDREPPALDR QTSSSLLSHD
WPGNVRELRN VAERFALGLP AFKQAGTVSE NQSLGFAEAV EAFERSLLSE ALQRSGGNLS
QASQELGMAK TTLFDKVKKY GL