Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4561 |
Symbol | |
ID | 5107019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 5002560 |
End bp | 5003900 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640505832 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_001190040 |
Protein GI | 146309575 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCTC AGGTCATAGT GGTCGACGAC GAAGCGGCGA TTCGCGAGGC GGTGCAGCAG TGGCTGGAGC TGTCCGGTTT TACCGTGCGC ACCTGCGCCA GCGCGGCCGA AGCCCTGGCG GTGGTGGACC GCGACTTCCC CGGCATCGTC GTCAGCGATG TGCGCATGCC CGGCAGCGAT GGCCTGCAAC TGCTCGACAA GCTGCTGCAG GTGGACGCCG ACCTGCCGGT GATCCTGGTG ACCGGCCACG GCGACGTGCC CATGGCGGTG CAGGCGCTGC GCCAGGGCGC CTACGACTTC ATCGAGAAAC CCTTCACCCC CGAGCGCCTG CTCGACAGCG TGCGCCGTGC GCTGGACAAG CGCCGCCTGG TCTGCGAGAA CCGCCTGCTG CGTCAGCAGG TGGCGAACAA GGGGCGTATC GAAAGCCAGC TGATCGGCAT TTCGCGGCCG ATGGAAAGCC TGCGCCGGCA GATCCTCGAG CTGGCCGGCA CCTCGGTCAA CGTGCTCATT CGCGGCGAGA CCGGCAGCGG CAAGGAGCGC GTGGCGCGCT GCCTGCACGA CTTCAGCCCG CGCGCCGGCA AGGCCTTCGC CGCGCTCAAC TGCGCGGCGA TTCCCGAGAC CATCTTCGAG AGCGAGCTGT TCGGTCACGA GAGCGGCGCC TTCACCGGTG CCCAGGCGCG GCGCATCGGC CGTATCGAGC ATGCCGACGG CGGTACCCTG TTCCTCGACG AGGTCGAGAG TCTGCCGTTG GCGCAGCAGG TCAAGCTCCT GCGCGTGCTG CAGGAGAAGA CTCTGGAGCG CCTCGGTTCG AACAAGAGCA TCCAGGTCGA TCTGCGGGTG ATCAGCGCGG CCAAGCCGGA TCTGCTCGAC GAGGTCAAGG CCGGGCGCTT CCGCGAGGAC CTGGTGTATC GCCTGAACGT CGCCACCCTG CACATTCCGC CGCTGCGCGA GCGCCGCGAG GACATTCCGC TGCTGTTCGA GCACTTTGCT CGTGCCGCCG CCGAGCGTCA CGGCCGCGAG GTGCCACCGC TGGCACCCAG CGAGCTGGCG CGGCTGCTCG GTCATGACTG GCCGGGCAAC GTACGCGAGC TGATCAATGC CGCCGAGCGC CATGCCCTGG GGCTGTCCAG CCCGCCGCCG GCCGAGCGCT TCGCCGGTCA GGCACTGGCG CAGCAGATGG AAGCCTTCGA AGCGCAGTGC CTGCACAACG CCCTGCTGCA ATGCCAGGGC AACATCGCCG CGGTGATGGA GATGCTGCAG CTGCCGCGCC GCACCCTCAA CGAGAAGATG CAGCGCCACG GTCTGGCGCG CGGTGACTAC CTGCCCGGCG GCGAGGAGTA G
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Protein sequence | MSAQVIVVDD EAAIREAVQQ WLELSGFTVR TCASAAEALA VVDRDFPGIV VSDVRMPGSD GLQLLDKLLQ VDADLPVILV TGHGDVPMAV QALRQGAYDF IEKPFTPERL LDSVRRALDK RRLVCENRLL RQQVANKGRI ESQLIGISRP MESLRRQILE LAGTSVNVLI RGETGSGKER VARCLHDFSP RAGKAFAALN CAAIPETIFE SELFGHESGA FTGAQARRIG RIEHADGGTL FLDEVESLPL AQQVKLLRVL QEKTLERLGS NKSIQVDLRV ISAAKPDLLD EVKAGRFRED LVYRLNVATL HIPPLRERRE DIPLLFEHFA RAAAERHGRE VPPLAPSELA RLLGHDWPGN VRELINAAER HALGLSSPPP AERFAGQALA QQMEAFEAQC LHNALLQCQG NIAAVMEMLQ LPRRTLNEKM QRHGLARGDY LPGGEE
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