More than 300 homologs were found in PanDaTox collection
for query gene Pput_0278 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0263  two component, sigma54 specific, transcriptional regulator, Fis family  99.36 
 
 
468 aa  914    Pseudomonas putida KT2440  Bacteria  normal  0.513605  normal  0.0177919 
 
 
-
 
NC_012560  Avin_03680  C4 dicarboxylate two-component response regulator, sigma54-dependent; DctD2  82.17 
 
 
461 aa  726    Azotobacter vinelandii DJ  Bacteria  normal  0.0105245  n/a   
 
 
-
 
NC_004578  PSPTO_5399  sigma-54 dependent transcriptional regulator/response regulator  81.76 
 
 
461 aa  736    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4938  helix-turn-helix, Fis-type  81.72 
 
 
463 aa  736    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0287  two component, sigma-54 specific, Fis family transcriptional regulator  84.16 
 
 
462 aa  766    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.378858 
 
 
-
 
NC_009512  Pput_0278  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
468 aa  920    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4294  two component, sigma54 specific, Fis family transcriptional regulator  83.26 
 
 
461 aa  757    Pseudomonas mendocina ymp  Bacteria  normal  normal  0.595978 
 
 
-
 
NC_009656  PSPA7_5905  two-component response regulator  75.32 
 
 
462 aa  672    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_68250  two-component response regulator  75.8 
 
 
462 aa  675    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.371358  normal  0.144717 
 
 
-
 
NC_010501  PputW619_4947  two component, sigma54 specific, Fis family transcriptional regulator  91.88 
 
 
469 aa  824    Pseudomonas putida W619  Bacteria  normal  0.669147  hitchhiker  0.0000241398 
 
 
-
 
NC_010322  PputGB1_0288  two component, sigma54 specific, Fis family transcriptional regulator  97.44 
 
 
468 aa  875    Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  55.75 
 
 
461 aa  466  9.999999999999999e-131  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3453  two component, sigma54 specific, Fis family transcriptional regulator  54.75 
 
 
445 aa  462  1e-129  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004047  C4-dicarboxylate transport transcriptional regulatory protein  51.46 
 
 
445 aa  461  9.999999999999999e-129  Vibrio sp. Ex25  Bacteria  normal  0.114732  n/a   
 
 
-
 
NC_007298  Daro_0477  two component, sigma54 specific, Fis family transcriptional regulator  55.86 
 
 
443 aa  459  9.999999999999999e-129  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  54.75 
 
 
446 aa  459  9.999999999999999e-129  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_72720  putative two-component response regulator  55.2 
 
 
447 aa  458  9.999999999999999e-129  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.269979  normal 
 
 
-
 
NC_009457  VC0395_A1516  C4-dicarboxylate transport transcriptional regulatory protein  52.93 
 
 
446 aa  456  1e-127  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  55.45 
 
 
444 aa  452  1.0000000000000001e-126  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_009997  Sbal195_2953  two component, sigma54 specific, Fis family transcriptional regulator  52.49 
 
 
459 aa  448  1e-125  Shewanella baltica OS195  Bacteria  normal  normal  0.0277282 
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  55.45 
 
 
444 aa  451  1e-125  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2669  two component, sigma54 specific, Fis family transcriptional regulator  54.55 
 
 
439 aa  449  1e-125  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4770  two component, sigma54 specific, Fis family transcriptional regulator  56.33 
 
 
446 aa  450  1e-125  Methylobacterium sp. 4-46  Bacteria  normal  0.133057  normal  0.593625 
 
 
-
 
NC_009654  Mmwyl1_0915  two component, sigma54 specific, Fis family transcriptional regulator  51.45 
 
 
452 aa  449  1e-125  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_6313  putative two-component response regulator  55.66 
 
 
447 aa  450  1e-125  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_011663  Sbal223_1548  two component, sigma54 specific, transcriptional regulator, Fis family  52.49 
 
 
459 aa  448  1e-125  Shewanella baltica OS223  Bacteria  normal  0.816634  normal 
 
 
-
 
NC_008321  Shewmr4_1359  two component, sigma54 specific, Fis family transcriptional regulator  52.49 
 
 
459 aa  448  1e-125  Shewanella sp. MR-4  Bacteria  normal  normal  0.0913399 
 
 
-
 
NC_008322  Shewmr7_1424  two component, sigma54 specific, Fis family transcriptional regulator  52.49 
 
 
459 aa  449  1e-125  Shewanella sp. MR-7  Bacteria  normal  normal  0.545985 
 
 
-
 
NC_008345  Sfri_2719  two component, sigma54 specific, transcriptional regulator, Fis family protein  51.57 
 
 
457 aa  450  1e-125  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1412  two component, sigma54 specific, Fis family transcriptional regulator  52.7 
 
 
459 aa  450  1e-125  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2828  two component, sigma54 specific, Fis family transcriptional regulator  52.49 
 
 
459 aa  446  1.0000000000000001e-124  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3138  C4-dicarboxylate transport transcriptional regulatory protein  52.26 
 
 
459 aa  446  1.0000000000000001e-124  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_4176  sigma-54 dependent transcriptional regulator/response regulator  52.24 
 
 
442 aa  446  1.0000000000000001e-124  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.999918  n/a   
 
 
-
 
NC_010002  Daci_4293  two component, sigma54 specific, Fis family transcriptional regulator  52.94 
 
 
448 aa  445  1.0000000000000001e-124  Delftia acidovorans SPH-1  Bacteria  normal  0.475037  normal 
 
 
-
 
NC_011757  Mchl_3285  two component, sigma54 specific, transcriptional regulator, Fis family  55.33 
 
 
450 aa  448  1.0000000000000001e-124  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2810  two component, sigma54 specific, Fis family transcriptional regulator  52.49 
 
 
459 aa  447  1.0000000000000001e-124  Shewanella baltica OS155  Bacteria  normal  0.776829  n/a   
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  53.39 
 
 
446 aa  447  1.0000000000000001e-124  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_002947  PP_1066  two component, sigma54 specific, transcriptional regulator, Fis family  52.95 
 
 
442 aa  443  1e-123  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3913  helix-turn-helix, Fis-type  51.79 
 
 
442 aa  445  1e-123  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.289305  normal  0.253976 
 
 
-
 
NC_009656  PSPA7_4050  putative two-component response regulator  53.06 
 
 
441 aa  442  1e-123  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4410  two component, sigma54 specific, Fis family transcriptional regulator  55.23 
 
 
444 aa  444  1e-123  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2504  two component, sigma54 specific, Fis family transcriptional regulator  51.58 
 
 
459 aa  445  1e-123  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4346  two component, sigma54 specific, Fis family transcriptional regulator  52.95 
 
 
442 aa  444  1e-123  Pseudomonas putida GB-1  Bacteria  normal  0.788839  normal 
 
 
-
 
NC_007973  Rmet_0588  Fis family transcriptional regulator  53.74 
 
 
458 aa  444  1e-123  Cupriavidus metallidurans CH34  Bacteria  normal  0.651672  normal 
 
 
-
 
NC_009512  Pput_1107  two component, sigma54 specific, Fis family transcriptional regulator  52.95 
 
 
442 aa  444  1e-123  Pseudomonas putida F1  Bacteria  normal  normal  0.248973 
 
 
-
 
NC_010084  Bmul_0432  two component, sigma54 specific, Fis family transcriptional regulator  51.66 
 
 
450 aa  442  1e-123  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2213  response regulator receiver protein  51.76 
 
 
461 aa  445  1e-123  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3936  two component, sigma54 specific, Fis family transcriptional regulator  49.89 
 
 
441 aa  439  9.999999999999999e-123  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4048  two component, sigma54 specific, Fis family transcriptional regulator  54.12 
 
 
459 aa  440  9.999999999999999e-123  Xanthobacter autotrophicus Py2  Bacteria  normal  0.650008  normal  0.353812 
 
 
-
 
NC_010725  Mpop_3260  two component, sigma54 specific, transcriptional regulator, Fis family  55.56 
 
 
450 aa  439  9.999999999999999e-123  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3995  helix-turn-helix, Fis-type  53.41 
 
 
444 aa  439  9.999999999999999e-123  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0385153 
 
 
-
 
NC_009620  Smed_4689  two component, sigma54 specific, Fis family transcriptional regulator  51.46 
 
 
447 aa  441  9.999999999999999e-123  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.338732 
 
 
-
 
NC_010501  PputW619_1095  two component, sigma54 specific, Fis family transcriptional regulator  52.5 
 
 
442 aa  439  9.999999999999999e-123  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_2818  C4-dicarboxylate transport transcriptional regulatory protein  51.12 
 
 
451 aa  436  1e-121  Burkholderia mallei NCTC 10247  Bacteria  normal  0.896177  n/a   
 
 
-
 
NC_008836  BMA10229_A1392  C4-dicarboxylate transport transcriptional regulatory protein  51.12 
 
 
451 aa  436  1e-121  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0458  C4-dicarboxylate transport transcriptional response regulator DctD  51.12 
 
 
451 aa  436  1e-121  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA3226  C4-dicarboxylate transport transcriptional regulatory protein  51.12 
 
 
451 aa  436  1e-121  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2148  helix-turn-helix, Fis-type  53.03 
 
 
442 aa  437  1e-121  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.383237 
 
 
-
 
NC_007434  BURPS1710b_0642  C4-dicarboxylate transport transcriptional regulatory protein  51.12 
 
 
451 aa  436  1e-121  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1042  two component, sigma54 specific, Fis family transcriptional regulator  54.09 
 
 
444 aa  436  1e-121  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0306  two component, sigma54 specific, Fis family transcriptional regulator  51.47 
 
 
453 aa  437  1e-121  Burkholderia sp. 383  Bacteria  normal  0.794109  normal 
 
 
-
 
NC_009092  Shew_1442  two component, sigma54 specific, Fis family transcriptional regulator  51.35 
 
 
455 aa  437  1e-121  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0401  C4-dicarboxylate transport transcriptional regulatory protein  50.89 
 
 
451 aa  438  1e-121  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0369  two component, sigma54 specific, Fis family transcriptional regulator  54.75 
 
 
451 aa  436  1e-121  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3061  sigma-54 factor interaction domain-containing protein  55.33 
 
 
450 aa  438  1e-121  Methylobacterium extorquens PA1  Bacteria  normal  0.305462  normal 
 
 
-
 
NC_010506  Swoo_1722  two component, sigma54 specific, Fis family transcriptional regulator  50.44 
 
 
455 aa  436  1e-121  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0267167 
 
 
-
 
NC_008390  Bamb_2926  two component, sigma54 specific, Fis family transcriptional regulator  51 
 
 
451 aa  437  1e-121  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0478  C4-dicarboxylate transport transcriptional response regulator DctD  51.12 
 
 
451 aa  436  1e-121  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0201  C4-dicarboxylate transport transcriptional regulatory protein  51.12 
 
 
451 aa  436  1e-121  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_2882  two component, sigma54 specific, Fis family transcriptional regulator  50.44 
 
 
450 aa  436  1e-121  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.486122  normal 
 
 
-
 
NC_010551  BamMC406_2788  two component, sigma54 specific, Fis family transcriptional regulator  51 
 
 
451 aa  437  1e-121  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_6228  two component response regulator for C4-dicarboxylate transport  51.88 
 
 
458 aa  434  1e-120  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2912  two component, sigma54 specific, Fis family transcriptional regulator  50.56 
 
 
455 aa  432  1e-120  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_5221  two component, sigma54 specific, Fis family transcriptional regulator  51.69 
 
 
453 aa  432  1e-120  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2681  two component, sigma54 specific, Fis family transcriptional regulator  50 
 
 
444 aa  432  1e-120  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.818562 
 
 
-
 
NC_007435  BURPS1710b_A1573  C4-dicarboxylate transport transcriptional response regulator  52.01 
 
 
472 aa  433  1e-120  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.000200154  n/a   
 
 
-
 
NC_007492  Pfl01_4540  two component, sigma-54 specific, Fis family transcriptional regulator  51.25 
 
 
442 aa  433  1e-120  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.203781  normal  0.155775 
 
 
-
 
NC_007510  Bcep18194_A6213  two component, sigma54 specific, Fis family transcriptional regulator  50.22 
 
 
451 aa  432  1e-120  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2719  two component, sigma54 specific, transcriptional regulator, Fis family  54.04 
 
 
448 aa  434  1e-120  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2257  two component, sigma54 specific, Fis family transcriptional regulator  50.67 
 
 
450 aa  435  1e-120  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4692  two component, sigma54 specific, Fis family transcriptional regulator  51.47 
 
 
453 aa  432  1e-120  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0995721 
 
 
-
 
NC_008463  PA14_46990  putative two-component response regulator  53.27 
 
 
425 aa  433  1e-120  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0103448  normal  0.161007 
 
 
-
 
NC_008542  Bcen2424_2871  two component, sigma54 specific, Fis family transcriptional regulator  50.67 
 
 
450 aa  435  1e-120  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0598017  n/a   
 
 
-
 
NC_010511  M446_1249  two component, sigma54 specific, Fis family transcriptional regulator  50 
 
 
452 aa  432  1e-120  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0712  C4-dicarboxylate transport sigma-54 regulatory protein  50.57 
 
 
446 aa  433  1e-120  Psychromonas ingrahamii 37  Bacteria  normal  0.212594  normal 
 
 
-
 
NC_009620  Smed_4176  two component, sigma54 specific, Fis family transcriptional regulator  52.71 
 
 
452 aa  432  1e-120  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.280959 
 
 
-
 
NC_004578  PSPTO_4292  sigma-54 dependent transcriptional regulator/response regulator  52.05 
 
 
444 aa  431  1e-119  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0071  C4-dicarboxylate transport transcriptional regulatory protein  51.79 
 
 
447 aa  429  1e-119  Burkholderia mallei ATCC 23344  Bacteria  decreased coverage  0.00283689  n/a   
 
 
-
 
NC_010622  Bphy_0227  two component, sigma54 specific, Fis family transcriptional regulator  50.55 
 
 
452 aa  428  1e-119  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0275  helix-turn-helix, Fis-type  51.47 
 
 
441 aa  430  1e-119  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  52.38 
 
 
442 aa  431  1e-119  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_010086  Bmul_3388  two component, sigma54 specific, Fis family transcriptional regulator  51.79 
 
 
453 aa  431  1e-119  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008835  BMA10229_1511  C4-dicarboxylate transport transcriptional regulatory protein  51.79 
 
 
448 aa  429  1e-119  Burkholderia mallei NCTC 10229  Bacteria  normal  0.19671  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0083  C4-dicarboxylate transport transcriptional regulatory protein  51.79 
 
 
448 aa  429  1e-119  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0086  C4-dicarboxylate transport transcriptional regulatory protein  51.79 
 
 
448 aa  429  1e-119  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3024  two component, sigma54 specific, Fis family transcriptional regulator  51.47 
 
 
453 aa  428  1e-119  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5342  two component, sigma54 specific, Fis family transcriptional regulator  51.47 
 
 
453 aa  428  1e-119  Burkholderia cenocepacia HI2424  Bacteria  normal  0.71249  normal  0.508922 
 
 
-
 
NC_009668  Oant_3478  two component, sigma54 specific, Fis family transcriptional regulator  51.79 
 
 
450 aa  430  1e-119  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0520  two component, sigma54 specific, transcriptional regulator, Fis family  50.89 
 
 
450 aa  431  1e-119  Burkholderia phytofirmans PsJN  Bacteria  normal  0.150741  normal 
 
 
-
 
NC_009075  BURPS668_A0103  C4-dicarboxylate transport transcriptional response regulator  51.79 
 
 
447 aa  429  1e-119  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.00799135  n/a   
 
 
-
 
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