Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1442 |
Symbol | |
ID | 4923149 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1657319 |
End bp | 1658686 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640162981 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_001093568 |
Protein GI | 127512371 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAATC AAGTTTTTAA TCAATACGAC ATCTTAATCG TCGACGACGA GCCCCTGATA GGCTCGGCCC TGGTGCAGCT GTTTGAACTC GAATCCTACC GCGCCCTGGC CCTCACCGAC GCCAAGCAGA TTGGCCTGGG CCTGCCCGAC AACTGGCCGG GCATAGTGAT CTCAGACGTC AACATGCCAG ATATCGACGG CCTATCGCTG ATGCGCACCC TGCTGGCTCA AGACAAGGAT ATTCCCATAA TCCTGCTGAC CGGCCACGGT GATATCGCCA TGGCGGTGCA GGCACTGAAA CAGGGGGCCT ATGATTTTAT CGAGAAGCCC TTTAACAACG AACACATGCT GGATATCGCC AAGCGCGCGC TGGAGAAACG CGCCCTGACC CTGGAAAACC GCAGCCTGAA ACGTGAGCTA GAATCCCAGA GCACCCCAGG GCCGCGCATT CTGGGTCACA GCCCGGGGAT CAAGCAGATG CGCCACATCA TCCATCAGGT GATCGATATG CCCGCCGATG TTTTAATTGA AGGCGAGACA GGCACGGGCA AGGAGCTGGT CGCCCGCTAT CTGCACGACC ACAGCCCTCG AGCAGAGGCC AACTTCGTCG CCATCAACTG CGGCGCCATC CCAGAGACCA TCATAGAGAG CGAGCTGTTT GGCGCCGAAT CTGGCGCCTT CACCGGCGCC GATAAGACAC GTATCGGCAA GTTCGAGTAT GCCAACGGCG GCACCCTGTT TCTCGACGAG ATTGAGAGCA CGCCGCTATC CTTGCAGGTT AAATTGCTCA GGGTATTGGA AGACAGGAAG GTGGAGCGCC TCGGCTCCAA CAAGAGCATA GACTTAGATA TTCGCATCAT TGCCGCCACT AAGGTGGATC TCAAGAGTCT GTGCGACACG GGCGAGTTTC GCCAGGATCT CCTCTATCGC CTCAATCTGG TGACTGTGCC GATTCCGGCT CTCAGGGAGC GGCGCGAAGA TATCGGCCTG CTGTTTCTGC ATTTCGCCCG GGTCGCCTCG GCCCGCTATC ACAAGGCCTT GATCCCCCTG ACGGCCGAAT ACACGGCCCA GCTGGTCTCC CACGACTGGC CCGGCAATGT AAGAGAGCTA CGAAACCTGG CCGAGCGTTA TGTGCTCTTA GGTCCAGAGG CGGCCTTTGC CACCTCACTG GGACAGAGCA GTCAACTCAA CGCCAACATG TCGCTGCAGC AGCGGGTGGA GTTTTTCGAG CGGCTGCTGA TCGAAGAGGC ACTGAGCAAC AACAAGGGCA GCATCAAGCT CACCATGGAG CAGCTAGAGC TGCCTCGCAA GACCCTCTAT GACAAGATGC AGAAGTTCGG CCTCAACCGT AAGACCTTCA TCAACTAA
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Protein sequence | MQNQVFNQYD ILIVDDEPLI GSALVQLFEL ESYRALALTD AKQIGLGLPD NWPGIVISDV NMPDIDGLSL MRTLLAQDKD IPIILLTGHG DIAMAVQALK QGAYDFIEKP FNNEHMLDIA KRALEKRALT LENRSLKREL ESQSTPGPRI LGHSPGIKQM RHIIHQVIDM PADVLIEGET GTGKELVARY LHDHSPRAEA NFVAINCGAI PETIIESELF GAESGAFTGA DKTRIGKFEY ANGGTLFLDE IESTPLSLQV KLLRVLEDRK VERLGSNKSI DLDIRIIAAT KVDLKSLCDT GEFRQDLLYR LNLVTVPIPA LRERREDIGL LFLHFARVAS ARYHKALIPL TAEYTAQLVS HDWPGNVREL RNLAERYVLL GPEAAFATSL GQSSQLNANM SLQQRVEFFE RLLIEEALSN NKGSIKLTME QLELPRKTLY DKMQKFGLNR KTFIN
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