Gene Shew_1442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1442 
Symbol 
ID4923149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1657319 
End bp1658686 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content57% 
IMG OID640162981 
Producttwo component, sigma54 specific, Fis family transcriptional regulator 
Protein accessionYP_001093568 
Protein GI127512371 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAATC AAGTTTTTAA TCAATACGAC ATCTTAATCG TCGACGACGA GCCCCTGATA 
GGCTCGGCCC TGGTGCAGCT GTTTGAACTC GAATCCTACC GCGCCCTGGC CCTCACCGAC
GCCAAGCAGA TTGGCCTGGG CCTGCCCGAC AACTGGCCGG GCATAGTGAT CTCAGACGTC
AACATGCCAG ATATCGACGG CCTATCGCTG ATGCGCACCC TGCTGGCTCA AGACAAGGAT
ATTCCCATAA TCCTGCTGAC CGGCCACGGT GATATCGCCA TGGCGGTGCA GGCACTGAAA
CAGGGGGCCT ATGATTTTAT CGAGAAGCCC TTTAACAACG AACACATGCT GGATATCGCC
AAGCGCGCGC TGGAGAAACG CGCCCTGACC CTGGAAAACC GCAGCCTGAA ACGTGAGCTA
GAATCCCAGA GCACCCCAGG GCCGCGCATT CTGGGTCACA GCCCGGGGAT CAAGCAGATG
CGCCACATCA TCCATCAGGT GATCGATATG CCCGCCGATG TTTTAATTGA AGGCGAGACA
GGCACGGGCA AGGAGCTGGT CGCCCGCTAT CTGCACGACC ACAGCCCTCG AGCAGAGGCC
AACTTCGTCG CCATCAACTG CGGCGCCATC CCAGAGACCA TCATAGAGAG CGAGCTGTTT
GGCGCCGAAT CTGGCGCCTT CACCGGCGCC GATAAGACAC GTATCGGCAA GTTCGAGTAT
GCCAACGGCG GCACCCTGTT TCTCGACGAG ATTGAGAGCA CGCCGCTATC CTTGCAGGTT
AAATTGCTCA GGGTATTGGA AGACAGGAAG GTGGAGCGCC TCGGCTCCAA CAAGAGCATA
GACTTAGATA TTCGCATCAT TGCCGCCACT AAGGTGGATC TCAAGAGTCT GTGCGACACG
GGCGAGTTTC GCCAGGATCT CCTCTATCGC CTCAATCTGG TGACTGTGCC GATTCCGGCT
CTCAGGGAGC GGCGCGAAGA TATCGGCCTG CTGTTTCTGC ATTTCGCCCG GGTCGCCTCG
GCCCGCTATC ACAAGGCCTT GATCCCCCTG ACGGCCGAAT ACACGGCCCA GCTGGTCTCC
CACGACTGGC CCGGCAATGT AAGAGAGCTA CGAAACCTGG CCGAGCGTTA TGTGCTCTTA
GGTCCAGAGG CGGCCTTTGC CACCTCACTG GGACAGAGCA GTCAACTCAA CGCCAACATG
TCGCTGCAGC AGCGGGTGGA GTTTTTCGAG CGGCTGCTGA TCGAAGAGGC ACTGAGCAAC
AACAAGGGCA GCATCAAGCT CACCATGGAG CAGCTAGAGC TGCCTCGCAA GACCCTCTAT
GACAAGATGC AGAAGTTCGG CCTCAACCGT AAGACCTTCA TCAACTAA
 
Protein sequence
MQNQVFNQYD ILIVDDEPLI GSALVQLFEL ESYRALALTD AKQIGLGLPD NWPGIVISDV 
NMPDIDGLSL MRTLLAQDKD IPIILLTGHG DIAMAVQALK QGAYDFIEKP FNNEHMLDIA
KRALEKRALT LENRSLKREL ESQSTPGPRI LGHSPGIKQM RHIIHQVIDM PADVLIEGET
GTGKELVARY LHDHSPRAEA NFVAINCGAI PETIIESELF GAESGAFTGA DKTRIGKFEY
ANGGTLFLDE IESTPLSLQV KLLRVLEDRK VERLGSNKSI DLDIRIIAAT KVDLKSLCDT
GEFRQDLLYR LNLVTVPIPA LRERREDIGL LFLHFARVAS ARYHKALIPL TAEYTAQLVS
HDWPGNVREL RNLAERYVLL GPEAAFATSL GQSSQLNANM SLQQRVEFFE RLLIEEALSN
NKGSIKLTME QLELPRKTLY DKMQKFGLNR KTFIN