| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4689 |
|---|
| Symbol | |
|---|
| ID | 5319331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 1206152 |
|---|
| End bp | 1207495 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776487 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_001313419 |
|---|
| Protein GI | 150376823 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.338732 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA GCCGCATCCT GCTCGTCGAT GATGAAGAGG AATTGCGCCG TTCCAGCGCT
CAGGCACTGG AGCTTGCGGG GTTTCGGGTG GATACCTTCG CCTGTGCCGA AGACGCGCTC
GAGCGCATCG CCTTCAGCTT CCACGGGGTG GTCATCAGCG ACATCCGAAT GCCCGGGATG
GATGGAATGA CCTTTCTGCA GCGCATCCGC GAGATCGATG CCGAACTGCC GGTGATCCTG
GTGACCGGTC ACGGCGATGT CCAGCTGGCG GTTCGGGCGA TGCGTGAGGG TGCCTATGAT
TTCGTCGAAA AGCCTTTCAC CGCCCAGATG CTCGCCGGCA CCATACGCCG CGCGCTCGAT
TGGCGCGCTC TCGTGCTCGA GAACCGCCGG TTGCGGGCTG TCGCGGGGAA GCGCGACGAC
ATAGAACAAA GGCTGCCGGG GCGGAGCCAA GCGATGGTGG ATCTGCGCTA CCGGGTCAGG
GCGATCGGCG CCTCTGACGC CGACACGCTG ATCATTGGCG AGACCGGCGT CGGAAAGGAA
GTCGTCGCCC GTGCGCTTCA TGATTTGAGC AGCCGCGCGA GGGGCCCGTT CATCGCCATC
AATTGTGCGG CACTTCCTCA GAATCTGATC GAGAGCGAAC TCTTTGGCCA CGAGCCGGGC
GCATTCCCCG GAGCGCTCAG GCCCCGTTAC GGCAAATTCG AACATGGCCG CGGCGGCACC
ATCCTGCTCG ACGAGATCGG CTCCATGCCT TTCGATCTTC AGGCAAAGTT CCTTCGCGTC
CTGCAGGAGC GTGTCATAAC CCGTCTCGGC TCGAACGAGA CCGTTTCACT GGACGTTCGC
TTCATCGCCA CCAGCAAGGT CGATTTGGAG CGCGAGGTCG CAAATGGCCG ATTCCGTGCC
GATCTGCTTT ACCGGCTGAA TGTCGCAACT TTGAGAGTGC CTACGCTGTC GCAGCGCCGC
TCCGACATCC CCTTGCTCTT CATGCAGCTC GTCCGCGAAT CCGCCGCCCG ATACGGCCGG
GACGATGTCG AGATATCGGC GGCGCTCGCA TCGGACATGG CTTCACGCGA ATGGCCGGGC
AATGTGCGTG AGCTGCGCAA TGCCGCCGAG CGTTTGATCC TCGGTCTCGA ACCCGAAAGC
GAAGAAGCGC TCGCTCCTGC GAATGGGCAG CGCCTCGCCG AAAAGGTGGC CGCCTTCGAA
AGAAGCGTGA TCGCCAGCGC GCTGGCCGCC CACGGTGGAG CATTGAAACC CGTTTACGAG
TCGCTCGGTA TCTCGCGCAA GACGCTTTAC GAGAAGATGC AGAAGTTCGG GCTCGACAAG
AAGGCTTTGA CTGAGGAGCG GTAG
|
|---|
| Protein sequence | MSESRILLVD DEEELRRSSA QALELAGFRV DTFACAEDAL ERIAFSFHGV VISDIRMPGM
DGMTFLQRIR EIDAELPVIL VTGHGDVQLA VRAMREGAYD FVEKPFTAQM LAGTIRRALD
WRALVLENRR LRAVAGKRDD IEQRLPGRSQ AMVDLRYRVR AIGASDADTL IIGETGVGKE
VVARALHDLS SRARGPFIAI NCAALPQNLI ESELFGHEPG AFPGALRPRY GKFEHGRGGT
ILLDEIGSMP FDLQAKFLRV LQERVITRLG SNETVSLDVR FIATSKVDLE REVANGRFRA
DLLYRLNVAT LRVPTLSQRR SDIPLLFMQL VRESAARYGR DDVEISAALA SDMASREWPG
NVRELRNAAE RLILGLEPES EEALAPANGQ RLAEKVAAFE RSVIASALAA HGGALKPVYE
SLGISRKTLY EKMQKFGLDK KALTEER
|
|---|
| |