Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5399 |
Symbol | |
ID | 1187086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 6132127 |
End bp | 6133512 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637396716 |
Product | sigma-54 dependent transcriptional regulator/response regulator |
Protein accession | NP_795126 |
Protein GI | 28872507 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTCGG AAACAGCCAT CGACAGCCAG ATTCAAGTGG TGCTGATCGA CGACGATTCG CACCTGCGCC AGGCCTTGCG TCAGACGCTG GACCTGGCCG GTCTGAACGT TCTGTCGCTG CCCCAGGCTT CAGGCCTTGC CGAACGTATC GGCCGCGACT GGCCGGGCGT GGTGGTCAGC GATATTCGTA TGCAGGGCAT GGATGGCCTG GAACTGCTCG ACCAACTGCA CGAGCAAGAC CCCGACCTGC CGGTGCTGCT GATCACCGGT CATGGTGACG TGCCATTGGC GGTCAAAGCC ATGCGCGCCG GGGCTTATGA CTTTCTGGAA AAACCCTTTG CCAGCGACGC CATGCTCGAC AGCGTGCGCC GGGCTCTGGC GCTACGCCGC CTGGTGCTGG ATAACCGCAG CCTGCGTCTG GCATTGAGCG ATCGCCAGCA GTTGAGCACC CGGCTGATCG GTCAGTCACC GTCGATATTG CGTCTGCGCG AACAGATCGG CGCCCTGGCC GGAACGCGCG CCGATGTGTT GATTCTGGGG GAGACCGGTG CGGGCAAAGA AGTCGTCGCC CGCGCCCTGC ATGATCTGTC CAACCGCCGC AGCGGACCGT TTGTGGCGAT CAACGCCGGG GCGCTGGCCG AGTCAGTGGT CGAAAGCGAG CTGTTCGGTC ATGAGCCCGG TGCGTTTACC GGCGCGCAGA AGCGGCGCAT CGGCAAGTTC GAGTTTGCCA ATGGCGGCAC GCTGTTCCTC GATGAAATCG AAAGCATGAG TATGGATGTG CAGGTCAAGC TGCTGCGCCT GTTGCAAGAG CGTGTTGTCG AGCGGATGGG CAGCAATCAA CAAATCCCGC TGGATATCCG CATCATCGCC GCCACCAAGG AAGACCTGCG TCAGGCGGCT GATCAGGGCC GTTTCAGGGC TGACTTGTAT TACCGGCTGA ACGTGGCCTC GCTGCGTATC CCGCCATTGC GCGAGCGTGG CGAAGATGCG CTGATGCTGT TTGAGCATTA CGCCGACGCG GCCAGCATGC GCCACGGTAT TCCCCAACAC GAACTCAAGC CGGGGCAGCG GGCGCTGTTG TTGCGCCACA ACTGGCCGGG CAATGTGCGC GAGCTGCAAA ACGCCGCCGA ACGTTTTGCG CTGGGCCTGG AACTGGAGCT GGAAGGCGGC GATGCCGAGC AGGCGCCACC GCCGGGCGGC GGGTTGAGTG ATCAGGTGGA AAGTTTCGAG CGGGCCTTGA TCGCCGCCGA GCTGGCTCGC CCACACAGCT CTGTACGCAG CCTGGCGGAA GCGTTGGGTG TACCGCGCAA AACCCTGCAC GACAAATTGC GCAAACACGG CCTGACGTTT GGCGACAGCG GTGGAGCGTC CGATGACAAC GATTGA
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Protein sequence | MSSETAIDSQ IQVVLIDDDS HLRQALRQTL DLAGLNVLSL PQASGLAERI GRDWPGVVVS DIRMQGMDGL ELLDQLHEQD PDLPVLLITG HGDVPLAVKA MRAGAYDFLE KPFASDAMLD SVRRALALRR LVLDNRSLRL ALSDRQQLST RLIGQSPSIL RLREQIGALA GTRADVLILG ETGAGKEVVA RALHDLSNRR SGPFVAINAG ALAESVVESE LFGHEPGAFT GAQKRRIGKF EFANGGTLFL DEIESMSMDV QVKLLRLLQE RVVERMGSNQ QIPLDIRIIA ATKEDLRQAA DQGRFRADLY YRLNVASLRI PPLRERGEDA LMLFEHYADA ASMRHGIPQH ELKPGQRALL LRHNWPGNVR ELQNAAERFA LGLELELEGG DAEQAPPPGG GLSDQVESFE RALIAAELAR PHSSVRSLAE ALGVPRKTLH DKLRKHGLTF GDSGGASDDN D
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