Gene PSPTO_5399 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5399 
Symbol 
ID1187086 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp6132127 
End bp6133512 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content63% 
IMG OID637396716 
Productsigma-54 dependent transcriptional regulator/response regulator 
Protein accessionNP_795126 
Protein GI28872507 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTCGG AAACAGCCAT CGACAGCCAG ATTCAAGTGG TGCTGATCGA CGACGATTCG 
CACCTGCGCC AGGCCTTGCG TCAGACGCTG GACCTGGCCG GTCTGAACGT TCTGTCGCTG
CCCCAGGCTT CAGGCCTTGC CGAACGTATC GGCCGCGACT GGCCGGGCGT GGTGGTCAGC
GATATTCGTA TGCAGGGCAT GGATGGCCTG GAACTGCTCG ACCAACTGCA CGAGCAAGAC
CCCGACCTGC CGGTGCTGCT GATCACCGGT CATGGTGACG TGCCATTGGC GGTCAAAGCC
ATGCGCGCCG GGGCTTATGA CTTTCTGGAA AAACCCTTTG CCAGCGACGC CATGCTCGAC
AGCGTGCGCC GGGCTCTGGC GCTACGCCGC CTGGTGCTGG ATAACCGCAG CCTGCGTCTG
GCATTGAGCG ATCGCCAGCA GTTGAGCACC CGGCTGATCG GTCAGTCACC GTCGATATTG
CGTCTGCGCG AACAGATCGG CGCCCTGGCC GGAACGCGCG CCGATGTGTT GATTCTGGGG
GAGACCGGTG CGGGCAAAGA AGTCGTCGCC CGCGCCCTGC ATGATCTGTC CAACCGCCGC
AGCGGACCGT TTGTGGCGAT CAACGCCGGG GCGCTGGCCG AGTCAGTGGT CGAAAGCGAG
CTGTTCGGTC ATGAGCCCGG TGCGTTTACC GGCGCGCAGA AGCGGCGCAT CGGCAAGTTC
GAGTTTGCCA ATGGCGGCAC GCTGTTCCTC GATGAAATCG AAAGCATGAG TATGGATGTG
CAGGTCAAGC TGCTGCGCCT GTTGCAAGAG CGTGTTGTCG AGCGGATGGG CAGCAATCAA
CAAATCCCGC TGGATATCCG CATCATCGCC GCCACCAAGG AAGACCTGCG TCAGGCGGCT
GATCAGGGCC GTTTCAGGGC TGACTTGTAT TACCGGCTGA ACGTGGCCTC GCTGCGTATC
CCGCCATTGC GCGAGCGTGG CGAAGATGCG CTGATGCTGT TTGAGCATTA CGCCGACGCG
GCCAGCATGC GCCACGGTAT TCCCCAACAC GAACTCAAGC CGGGGCAGCG GGCGCTGTTG
TTGCGCCACA ACTGGCCGGG CAATGTGCGC GAGCTGCAAA ACGCCGCCGA ACGTTTTGCG
CTGGGCCTGG AACTGGAGCT GGAAGGCGGC GATGCCGAGC AGGCGCCACC GCCGGGCGGC
GGGTTGAGTG ATCAGGTGGA AAGTTTCGAG CGGGCCTTGA TCGCCGCCGA GCTGGCTCGC
CCACACAGCT CTGTACGCAG CCTGGCGGAA GCGTTGGGTG TACCGCGCAA AACCCTGCAC
GACAAATTGC GCAAACACGG CCTGACGTTT GGCGACAGCG GTGGAGCGTC CGATGACAAC
GATTGA
 
Protein sequence
MSSETAIDSQ IQVVLIDDDS HLRQALRQTL DLAGLNVLSL PQASGLAERI GRDWPGVVVS 
DIRMQGMDGL ELLDQLHEQD PDLPVLLITG HGDVPLAVKA MRAGAYDFLE KPFASDAMLD
SVRRALALRR LVLDNRSLRL ALSDRQQLST RLIGQSPSIL RLREQIGALA GTRADVLILG
ETGAGKEVVA RALHDLSNRR SGPFVAINAG ALAESVVESE LFGHEPGAFT GAQKRRIGKF
EFANGGTLFL DEIESMSMDV QVKLLRLLQE RVVERMGSNQ QIPLDIRIIA ATKEDLRQAA
DQGRFRADLY YRLNVASLRI PPLRERGEDA LMLFEHYADA ASMRHGIPQH ELKPGQRALL
LRHNWPGNVR ELQNAAERFA LGLELELEGG DAEQAPPPGG GLSDQVESFE RALIAAELAR
PHSSVRSLAE ALGVPRKTLH DKLRKHGLTF GDSGGASDDN D