More than 300 homologs were found in PanDaTox collection
for query gene PP_1066 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009512  Pput_1107  two component, sigma54 specific, Fis family transcriptional regulator  99.77 
 
 
442 aa  892    Pseudomonas putida F1  Bacteria  normal  normal  0.248973 
 
 
-
 
NC_002947  PP_1066  two component, sigma54 specific, transcriptional regulator, Fis family  100 
 
 
442 aa  892    Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4176  sigma-54 dependent transcriptional regulator/response regulator  85.62 
 
 
442 aa  761    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.999918  n/a   
 
 
-
 
NC_007005  Psyr_3913  helix-turn-helix, Fis-type  86.7 
 
 
442 aa  765    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.289305  normal  0.253976 
 
 
-
 
NC_007492  Pfl01_4540  two component, sigma-54 specific, Fis family transcriptional regulator  86.5 
 
 
442 aa  770    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.203781  normal  0.155775 
 
 
-
 
NC_010322  PputGB1_4346  two component, sigma54 specific, Fis family transcriptional regulator  98.42 
 
 
442 aa  878    Pseudomonas putida GB-1  Bacteria  normal  0.788839  normal 
 
 
-
 
NC_009656  PSPA7_4050  putative two-component response regulator  82.31 
 
 
441 aa  718    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1095  two component, sigma54 specific, Fis family transcriptional regulator  97.06 
 
 
442 aa  867    Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_46990  putative two-component response regulator  81.6 
 
 
425 aa  691    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0103448  normal  0.161007 
 
 
-
 
NC_007347  Reut_A2669  two component, sigma54 specific, Fis family transcriptional regulator  67.58 
 
 
439 aa  584  1e-166  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0588  Fis family transcriptional regulator  65.91 
 
 
458 aa  569  1e-161  Cupriavidus metallidurans CH34  Bacteria  normal  0.651672  normal 
 
 
-
 
NC_007908  Rfer_3453  two component, sigma54 specific, Fis family transcriptional regulator  63.01 
 
 
445 aa  558  1e-158  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4293  two component, sigma54 specific, Fis family transcriptional regulator  62.98 
 
 
448 aa  552  1e-156  Delftia acidovorans SPH-1  Bacteria  normal  0.475037  normal 
 
 
-
 
NC_007298  Daro_0477  two component, sigma54 specific, Fis family transcriptional regulator  63.86 
 
 
443 aa  549  1e-155  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2681  two component, sigma54 specific, Fis family transcriptional regulator  59.55 
 
 
444 aa  528  1e-149  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.818562 
 
 
-
 
NC_009720  Xaut_3936  two component, sigma54 specific, Fis family transcriptional regulator  60.14 
 
 
441 aa  526  1e-148  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0520  two component, sigma54 specific, transcriptional regulator, Fis family  57.95 
 
 
450 aa  502  1e-141  Burkholderia phytofirmans PsJN  Bacteria  normal  0.150741  normal 
 
 
-
 
NC_010511  M446_1249  two component, sigma54 specific, Fis family transcriptional regulator  57.89 
 
 
452 aa  501  1e-141  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0194  two component, sigma54 specific, transcriptional regulator, Fis family  57.76 
 
 
438 aa  498  1e-140  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0392315 
 
 
-
 
NC_007951  Bxe_A4195  two component, sigma-54 specific, Fis family transcriptional regulator  57.95 
 
 
450 aa  499  1e-140  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.314648 
 
 
-
 
NC_003295  RSc0332  C4-dicarboxylate transport response regulator transcription regulator protein  57.99 
 
 
438 aa  498  1e-139  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2148  helix-turn-helix, Fis-type  56.91 
 
 
442 aa  497  1e-139  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.383237 
 
 
-
 
NC_007347  Reut_A0275  helix-turn-helix, Fis-type  57.73 
 
 
441 aa  495  1e-139  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0188  two component, sigma54 specific, transcriptional regulator, Fis family  57.57 
 
 
438 aa  497  1e-139  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0230  Fis family transcriptional regulator  57.5 
 
 
444 aa  498  1e-139  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0227  two component, sigma54 specific, Fis family transcriptional regulator  56.14 
 
 
452 aa  491  1e-137  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0401  C4-dicarboxylate transport transcriptional regulatory protein  56.79 
 
 
451 aa  489  1e-137  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0432  two component, sigma54 specific, Fis family transcriptional regulator  56.59 
 
 
450 aa  490  1e-137  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_0458  C4-dicarboxylate transport transcriptional response regulator DctD  56.56 
 
 
451 aa  484  1e-136  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_2882  two component, sigma54 specific, Fis family transcriptional regulator  55.58 
 
 
450 aa  487  1e-136  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.486122  normal 
 
 
-
 
NC_008785  BMASAVP1_A0201  C4-dicarboxylate transport transcriptional regulatory protein  56.56 
 
 
451 aa  484  1e-136  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA3226  C4-dicarboxylate transport transcriptional regulatory protein  56.56 
 
 
451 aa  484  1e-136  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0642  C4-dicarboxylate transport transcriptional regulatory protein  56.56 
 
 
451 aa  484  1e-136  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0306  two component, sigma54 specific, Fis family transcriptional regulator  56.68 
 
 
453 aa  486  1e-136  Burkholderia sp. 383  Bacteria  normal  0.794109  normal 
 
 
-
 
NC_008836  BMA10229_A1392  C4-dicarboxylate transport transcriptional regulatory protein  56.56 
 
 
451 aa  484  1e-136  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0478  C4-dicarboxylate transport transcriptional response regulator DctD  56.56 
 
 
451 aa  484  1e-136  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2818  C4-dicarboxylate transport transcriptional regulatory protein  56.56 
 
 
451 aa  484  1e-136  Burkholderia mallei NCTC 10247  Bacteria  normal  0.896177  n/a   
 
 
-
 
NC_008060  Bcen_2257  two component, sigma54 specific, Fis family transcriptional regulator  55.58 
 
 
450 aa  485  1e-136  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2871  two component, sigma54 specific, Fis family transcriptional regulator  55.58 
 
 
450 aa  485  1e-136  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0598017  n/a   
 
 
-
 
NC_007510  Bcep18194_A6213  two component, sigma54 specific, Fis family transcriptional regulator  55.91 
 
 
451 aa  484  1e-135  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2788  two component, sigma54 specific, Fis family transcriptional regulator  55.91 
 
 
451 aa  483  1e-135  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2926  two component, sigma54 specific, Fis family transcriptional regulator  55.91 
 
 
451 aa  483  1e-135  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4692  two component, sigma54 specific, Fis family transcriptional regulator  56.22 
 
 
453 aa  482  1e-135  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0995721 
 
 
-
 
NC_010725  Mpop_1208  two component, sigma54 specific, transcriptional regulator, Fis family  56.08 
 
 
458 aa  479  1e-134  Methylobacterium populi BJ001  Bacteria  normal  0.320827  normal  0.373488 
 
 
-
 
NC_010515  Bcenmc03_4926  two component, sigma54 specific, Fis family transcriptional regulator  56.22 
 
 
453 aa  479  1e-134  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1419  two component, sigma54 specific, transcriptional regulator, Fis family  56.24 
 
 
451 aa  477  1e-133  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.895196 
 
 
-
 
NC_010172  Mext_1258  sigma-54 factor interaction domain-containing protein  56.24 
 
 
451 aa  477  1e-133  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.438925 
 
 
-
 
NC_008061  Bcen_3024  two component, sigma54 specific, Fis family transcriptional regulator  56.68 
 
 
453 aa  476  1e-133  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5342  two component, sigma54 specific, Fis family transcriptional regulator  56.68 
 
 
453 aa  476  1e-133  Burkholderia cenocepacia HI2424  Bacteria  normal  0.71249  normal  0.508922 
 
 
-
 
NC_010552  BamMC406_5221  two component, sigma54 specific, Fis family transcriptional regulator  56.45 
 
 
453 aa  474  1e-132  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5669  two component, sigma54 specific, Fis family transcriptional regulator  55.68 
 
 
454 aa  474  1e-132  Burkholderia phymatum STM815  Bacteria  normal  0.946519  normal 
 
 
-
 
NC_010678  Rpic_3789  two component, sigma54 specific, transcriptional regulator, Fis family  53.86 
 
 
452 aa  470  1.0000000000000001e-131  Ralstonia pickettii 12J  Bacteria  normal  normal  0.146089 
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  56.68 
 
 
446 aa  469  1.0000000000000001e-131  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_010086  Bmul_3388  two component, sigma54 specific, Fis family transcriptional regulator  56.45 
 
 
453 aa  469  1.0000000000000001e-131  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  54.02 
 
 
461 aa  469  1.0000000000000001e-131  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_3902  two component, sigma54 specific, transcriptional regulator, Fis family  53.86 
 
 
452 aa  470  1.0000000000000001e-131  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  55.86 
 
 
446 aa  468  9.999999999999999e-131  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2347  two component, sigma54 specific, Fis family transcriptional regulator  53.06 
 
 
450 aa  465  9.999999999999999e-131  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp0009  response regulator of the C4-dicarboxylate transport two-component regulatory system transcription regulator protein  53.81 
 
 
454 aa  463  1e-129  Ralstonia solanacearum GMI1000  Bacteria  normal  0.313287  normal 
 
 
-
 
NC_007435  BURPS1710b_A1573  C4-dicarboxylate transport transcriptional response regulator  54.34 
 
 
472 aa  459  9.999999999999999e-129  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.000200154  n/a   
 
 
-
 
NC_012560  Avin_03680  C4 dicarboxylate two-component response regulator, sigma54-dependent; DctD2  54.04 
 
 
461 aa  459  9.999999999999999e-129  Azotobacter vinelandii DJ  Bacteria  normal  0.0105245  n/a   
 
 
-
 
NC_006349  BMAA0071  C4-dicarboxylate transport transcriptional regulatory protein  54.11 
 
 
447 aa  455  1e-127  Burkholderia mallei ATCC 23344  Bacteria  decreased coverage  0.00283689  n/a   
 
 
-
 
NC_008835  BMA10229_1511  C4-dicarboxylate transport transcriptional regulatory protein  54.11 
 
 
448 aa  456  1e-127  Burkholderia mallei NCTC 10229  Bacteria  normal  0.19671  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0083  C4-dicarboxylate transport transcriptional regulatory protein  54.11 
 
 
448 aa  456  1e-127  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0086  C4-dicarboxylate transport transcriptional regulatory protein  54.11 
 
 
448 aa  456  1e-127  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1231  C4-dicarboxylate transport transcriptional regulatory protein  54.11 
 
 
448 aa  456  1e-127  Burkholderia mallei SAVP1  Bacteria  normal  0.310276  n/a   
 
 
-
 
NC_008463  PA14_72720  putative two-component response regulator  55.17 
 
 
447 aa  457  1e-127  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.269979  normal 
 
 
-
 
NC_009075  BURPS668_A0103  C4-dicarboxylate transport transcriptional response regulator  54.34 
 
 
447 aa  456  1e-127  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.00799135  n/a   
 
 
-
 
NC_010524  Lcho_4338  two component, sigma54 specific, Fis family transcriptional regulator  53.21 
 
 
456 aa  457  1e-127  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009439  Pmen_4294  two component, sigma54 specific, Fis family transcriptional regulator  54.67 
 
 
461 aa  451  1.0000000000000001e-126  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.595978 
 
 
-
 
NC_009656  PSPA7_5905  two-component response regulator  54.13 
 
 
462 aa  452  1.0000000000000001e-126  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4048  two component, sigma54 specific, Fis family transcriptional regulator  54.46 
 
 
459 aa  454  1.0000000000000001e-126  Xanthobacter autotrophicus Py2  Bacteria  normal  0.650008  normal  0.353812 
 
 
-
 
NC_013456  VEA_004047  C4-dicarboxylate transport transcriptional regulatory protein  52.98 
 
 
445 aa  454  1.0000000000000001e-126  Vibrio sp. Ex25  Bacteria  normal  0.114732  n/a   
 
 
-
 
NC_008463  PA14_68250  two-component response regulator  54.36 
 
 
462 aa  453  1.0000000000000001e-126  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.371358  normal  0.144717 
 
 
-
 
NC_009654  Mmwyl1_0915  two component, sigma54 specific, Fis family transcriptional regulator  50.8 
 
 
452 aa  449  1e-125  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2213  response regulator receiver protein  52.05 
 
 
461 aa  451  1e-125  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  51.72 
 
 
444 aa  446  1.0000000000000001e-124  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3995  helix-turn-helix, Fis-type  52.64 
 
 
444 aa  447  1.0000000000000001e-124  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0385153 
 
 
-
 
NC_012792  Vapar_5345  two component, sigma54 specific, transcriptional regulator, Fis family  52.68 
 
 
455 aa  447  1.0000000000000001e-124  Variovorax paradoxus S110  Bacteria  normal  0.464024  n/a   
 
 
-
 
NC_009457  VC0395_A1516  C4-dicarboxylate transport transcriptional regulatory protein  52.06 
 
 
446 aa  446  1.0000000000000001e-124  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1442  two component, sigma54 specific, Fis family transcriptional regulator  50.68 
 
 
455 aa  445  1.0000000000000001e-124  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_2953  two component, sigma54 specific, Fis family transcriptional regulator  51.02 
 
 
459 aa  442  1e-123  Shewanella baltica OS195  Bacteria  normal  normal  0.0277282 
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  52.64 
 
 
442 aa  443  1e-123  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_009656  PSPA7_6313  putative two-component response regulator  54.94 
 
 
447 aa  444  1e-123  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_011663  Sbal223_1548  two component, sigma54 specific, transcriptional regulator, Fis family  51.02 
 
 
459 aa  441  1e-123  Shewanella baltica OS223  Bacteria  normal  0.816634  normal 
 
 
-
 
NC_009831  Ssed_2912  two component, sigma54 specific, Fis family transcriptional regulator  50.68 
 
 
455 aa  442  1e-123  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  51.26 
 
 
444 aa  442  1e-123  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_010322  PputGB1_4410  two component, sigma54 specific, Fis family transcriptional regulator  51.03 
 
 
444 aa  442  1e-123  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2828  two component, sigma54 specific, Fis family transcriptional regulator  51.25 
 
 
459 aa  442  1e-123  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0263  two component, sigma54 specific, transcriptional regulator, Fis family  52.73 
 
 
468 aa  439  9.999999999999999e-123  Pseudomonas putida KT2440  Bacteria  normal  0.513605  normal  0.0177919 
 
 
-
 
NC_004347  SO_3138  C4-dicarboxylate transport transcriptional regulatory protein  50.79 
 
 
459 aa  440  9.999999999999999e-123  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2810  two component, sigma54 specific, Fis family transcriptional regulator  51.02 
 
 
459 aa  441  9.999999999999999e-123  Shewanella baltica OS155  Bacteria  normal  0.776829  n/a   
 
 
-
 
NC_011757  Mchl_3285  two component, sigma54 specific, transcriptional regulator, Fis family  51.72 
 
 
450 aa  438  9.999999999999999e-123  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0288  two component, sigma54 specific, Fis family transcriptional regulator  52.27 
 
 
468 aa  439  9.999999999999999e-123  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4176  two component, sigma54 specific, Fis family transcriptional regulator  51.57 
 
 
452 aa  439  9.999999999999999e-123  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.280959 
 
 
-
 
NC_008322  Shewmr7_1424  two component, sigma54 specific, Fis family transcriptional regulator  50.57 
 
 
459 aa  438  9.999999999999999e-123  Shewanella sp. MR-7  Bacteria  normal  normal  0.545985 
 
 
-
 
NC_010501  PputW619_1042  two component, sigma54 specific, Fis family transcriptional regulator  51.72 
 
 
444 aa  438  9.999999999999999e-123  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1412  two component, sigma54 specific, Fis family transcriptional regulator  50.79 
 
 
459 aa  439  9.999999999999999e-123  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2504  two component, sigma54 specific, Fis family transcriptional regulator  50.57 
 
 
459 aa  438  9.999999999999999e-123  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3260  two component, sigma54 specific, transcriptional regulator, Fis family  51.7 
 
 
450 aa  435  1e-121  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
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