| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5345 |
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| Symbol | |
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| ID | 7975806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 49472 |
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| End bp | 50839 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795939 |
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| Product | two component, sigma54 specific, transcriptional regulator, Fis family |
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| Protein accession | YP_002947213 |
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| Protein GI | 239820028 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.464024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGAAA GCCCCGCCAT CCGGGTGATG CTGGTCGAGG ACGACGAAGA CGTCCGCATC
AGCACGACGC AGGTGCTGAC CCTGGCCGGT TTCGAGGTCG AGTCCTTTGC AAGCGTCGAA
CGCGCACGCG GCCACATCCG CTTCGGCGTG CCGGCCATCG TGGTCTGCGA CGTGCGCCTG
CCGGGCCTGA GCGGCGCCGA ATGGCTGCCC GAGCTGCACG GCATCGATGC CGAGCTGCCC
GTGATCCTGG TCACCGGCCA CGGCCATATC GCGATGGCGG TGCAGGCCAT GCGCGAGGGC
GCCTACGACT TCATCGAGAA GCCTTTCGGT TCCGAGCGGC TGGTGGCCAT CGTGCGCCAT
GCCGTCGAGC GCCGGCAGCT TTCATTGCAG GTGCGCGCGC TGCGCGATGC ATTGGAAAAC
TGGAACGGCA TCCAGTCGGT GCTGATCGGC CGGTCGGCCC AGATGCAGCT GGTGCGCCGC
AACGTGATGA CGCTGGCCGA AACCTCGGCC GACGTGCTGA TCTACGGCGA GACCGGCACC
GGCAAGGAAC TCGTCGCGCG CTGCCTGCAC GACCACAGCG AACGCCGCCG TCAGCATTTC
GTTCCGCTCA ACTGCGGCGG CCTGCCCGAG GCGCTGGCCG AGAGCGAGCT GTTCGGCCAC
GAGGCCGGCG CCTTCACCAG CGCCAACCGC GTGCGCGTAG GCAAGTTCGA ATATGCCAAC
GGCGGCACGC TCTTCCTCGA CGAGATCGAG AGCATGCCGG TAGCGGTGCA GATCAAGCTG
CTGCGCGCGC TGCAGGAACG CTGCATCGAG CGCATCGGCT CCAACAAGGC CATTCCCTTC
GACTGCCGCG TGGTGGCCGC AAGCAAGGAC GACCTGAAGG AAATGAGCGA CCGCCAGAAG
TTCAGGGCCG ACCTGTACTA CCGGCTCGGC GTCGCCTTCA TCGAGCTGCC GCCGCTGCGC
GAGCGGCGCG AGGACATTCC CCTGCTGTTC GAGCACTTCA CGCTGCTGGC CGCGAGCCGC
TACGAGCGTG CGGCGCCGCT GCCCACCAAC GCCCAGCTGG CCGACCTGAT GGCCTATGCG
TGGCCGGGCA ACGTGCGCGA GCTGCGCAAC GTGGCCGACC GCTTCGTGCT GGGCCTGCTC
GGCGAGCGCC TGACGCAGAC CCGCGGCACC GGCGAGGGCT CGCCGGCGCT GCCGCGCGCG
CTGCCGCAGC AGGTCGAATC CTTCGAGCGT GCGGTGATCG TCGAGGCGCT GCGCAAGCAC
CAGGGCGACC AGCCAGCCAC GGCCGCCGCG CTGGCCATCG CGCGGCAAAC GCTGCACGAC
AAGCTGCGCA AGCTCGGCAT CGCGGCGGAA GAGTTCAAGG CCCAGTGA
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| Protein sequence | MSESPAIRVM LVEDDEDVRI STTQVLTLAG FEVESFASVE RARGHIRFGV PAIVVCDVRL
PGLSGAEWLP ELHGIDAELP VILVTGHGHI AMAVQAMREG AYDFIEKPFG SERLVAIVRH
AVERRQLSLQ VRALRDALEN WNGIQSVLIG RSAQMQLVRR NVMTLAETSA DVLIYGETGT
GKELVARCLH DHSERRRQHF VPLNCGGLPE ALAESELFGH EAGAFTSANR VRVGKFEYAN
GGTLFLDEIE SMPVAVQIKL LRALQERCIE RIGSNKAIPF DCRVVAASKD DLKEMSDRQK
FRADLYYRLG VAFIELPPLR ERREDIPLLF EHFTLLAASR YERAAPLPTN AQLADLMAYA
WPGNVRELRN VADRFVLGLL GERLTQTRGT GEGSPALPRA LPQQVESFER AVIVEALRKH
QGDQPATAAA LAIARQTLHD KLRKLGIAAE EFKAQ
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