Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5345 |
Symbol | |
ID | 7975806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 49472 |
End bp | 50839 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644795939 |
Product | two component, sigma54 specific, transcriptional regulator, Fis family |
Protein accession | YP_002947213 |
Protein GI | 239820028 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.464024 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCGAAA GCCCCGCCAT CCGGGTGATG CTGGTCGAGG ACGACGAAGA CGTCCGCATC AGCACGACGC AGGTGCTGAC CCTGGCCGGT TTCGAGGTCG AGTCCTTTGC AAGCGTCGAA CGCGCACGCG GCCACATCCG CTTCGGCGTG CCGGCCATCG TGGTCTGCGA CGTGCGCCTG CCGGGCCTGA GCGGCGCCGA ATGGCTGCCC GAGCTGCACG GCATCGATGC CGAGCTGCCC GTGATCCTGG TCACCGGCCA CGGCCATATC GCGATGGCGG TGCAGGCCAT GCGCGAGGGC GCCTACGACT TCATCGAGAA GCCTTTCGGT TCCGAGCGGC TGGTGGCCAT CGTGCGCCAT GCCGTCGAGC GCCGGCAGCT TTCATTGCAG GTGCGCGCGC TGCGCGATGC ATTGGAAAAC TGGAACGGCA TCCAGTCGGT GCTGATCGGC CGGTCGGCCC AGATGCAGCT GGTGCGCCGC AACGTGATGA CGCTGGCCGA AACCTCGGCC GACGTGCTGA TCTACGGCGA GACCGGCACC GGCAAGGAAC TCGTCGCGCG CTGCCTGCAC GACCACAGCG AACGCCGCCG TCAGCATTTC GTTCCGCTCA ACTGCGGCGG CCTGCCCGAG GCGCTGGCCG AGAGCGAGCT GTTCGGCCAC GAGGCCGGCG CCTTCACCAG CGCCAACCGC GTGCGCGTAG GCAAGTTCGA ATATGCCAAC GGCGGCACGC TCTTCCTCGA CGAGATCGAG AGCATGCCGG TAGCGGTGCA GATCAAGCTG CTGCGCGCGC TGCAGGAACG CTGCATCGAG CGCATCGGCT CCAACAAGGC CATTCCCTTC GACTGCCGCG TGGTGGCCGC AAGCAAGGAC GACCTGAAGG AAATGAGCGA CCGCCAGAAG TTCAGGGCCG ACCTGTACTA CCGGCTCGGC GTCGCCTTCA TCGAGCTGCC GCCGCTGCGC GAGCGGCGCG AGGACATTCC CCTGCTGTTC GAGCACTTCA CGCTGCTGGC CGCGAGCCGC TACGAGCGTG CGGCGCCGCT GCCCACCAAC GCCCAGCTGG CCGACCTGAT GGCCTATGCG TGGCCGGGCA ACGTGCGCGA GCTGCGCAAC GTGGCCGACC GCTTCGTGCT GGGCCTGCTC GGCGAGCGCC TGACGCAGAC CCGCGGCACC GGCGAGGGCT CGCCGGCGCT GCCGCGCGCG CTGCCGCAGC AGGTCGAATC CTTCGAGCGT GCGGTGATCG TCGAGGCGCT GCGCAAGCAC CAGGGCGACC AGCCAGCCAC GGCCGCCGCG CTGGCCATCG CGCGGCAAAC GCTGCACGAC AAGCTGCGCA AGCTCGGCAT CGCGGCGGAA GAGTTCAAGG CCCAGTGA
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Protein sequence | MSESPAIRVM LVEDDEDVRI STTQVLTLAG FEVESFASVE RARGHIRFGV PAIVVCDVRL PGLSGAEWLP ELHGIDAELP VILVTGHGHI AMAVQAMREG AYDFIEKPFG SERLVAIVRH AVERRQLSLQ VRALRDALEN WNGIQSVLIG RSAQMQLVRR NVMTLAETSA DVLIYGETGT GKELVARCLH DHSERRRQHF VPLNCGGLPE ALAESELFGH EAGAFTSANR VRVGKFEYAN GGTLFLDEIE SMPVAVQIKL LRALQERCIE RIGSNKAIPF DCRVVAASKD DLKEMSDRQK FRADLYYRLG VAFIELPPLR ERREDIPLLF EHFTLLAASR YERAAPLPTN AQLADLMAYA WPGNVRELRN VADRFVLGLL GERLTQTRGT GEGSPALPRA LPQQVESFER AVIVEALRKH QGDQPATAAA LAIARQTLHD KLRKLGIAAE EFKAQ
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