Gene Lcho_2681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2681 
Symbol 
ID6162843 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2944785 
End bp2946119 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content68% 
IMG OID641665458 
Producttwo component, sigma54 specific, Fis family transcriptional regulator 
Protein accessionYP_001791711 
Protein GI171059362 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.818562 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGACCG ACCTCACCGT CCTGATCATC GAAGACGACG CCCACATGCG CCTGGGCTGC 
GTGCAGGTGA TGCAACTCGC GGGCATCCAG GTGCAGGGCT TCGGCAGCGC CGAAGAGGCG
CTGCGCCTCG TCAAGCCAGG TTTCCACGGT GTCATCGTCA CCGACATGCG ATTGCCCGGC
ATGGACGGCA TGGCGGTGAT CAAGCGCTGC CGCCAGCTCG ATGCCGACCT GCCGGTGCTC
GTCATCACCG GCCACGGCGA CATCACGATG GCGGTCGATT CGATGCGCAG CGGCGCCTAC
GATTTCATCA CCAAGCCCTT CGCACCGGAG CTGCTGCTCG AGGTCGTGCA GCGGGCGCTG
GAGAAGCGCG CGCTGACGCT GGAGATCTCC AACCTGCGCG AGCGCCTGGC CCGGCTCGAA
GGGGTCGAGG GCAAGCTGAT CGGCATCTCG CCGCAGATGG AACGGGTGCG GCGCCTGGTG
ATGGAAGTGG CCGACTCGCC GGTGGACGTG TTGATCCGCG GCGAGACCGG GGCCGGCAAG
GAACTGGTGG CGCAGGCGCT GCACCAGCTC TCGCGCCGCA AGTCTGCGCC CTATGTCGCG
CTGAACTGCG GCGGCCTGCC CGAGAACCTG CTCGACAGCG AGCTGTTCGG GCACGAGGCG
GGCGCCTTCA CCGGCGCGCA GAAGCGCCGC ATCGGCAAGA TCGAGCACGC CAACGGCGGC
ACGCTGTTCC TCGACGAGGT CGAGAGCATG CCCACCAGCG TGCAGATCAA GCTGCTGCGG
GTGCTGCAGG AGCGGGTGAT CGAGCGGCTG GGTTCGAACG CGCAGATTCC GGTCGATTGC
CGCATCGTGG CGGCGTCCAA GGACGACCTG TTCGAACGCG CGCAACGCCA GACCTTCCGC
GCCGACCTGT ACTACCGGCT CAACGTCGTC GCCATCGACC TGCCGCCGCT GCGCGAACGC
CGCGAGGACA TCCCGATGCT GCTGGAGCAC TTCATGCTGC TGGCCGCGAG CCGCTACGGC
CGGCCGCAAC CCGCCGTCTC GGCCCTTCAG ACCAGCCGGC TGATGGCGCA TTCGTGGCCC
GGCAATGTGC GTGAACTGCG CAATGTCGCC GATTGCCTGG TCCTTGGCGT CATGAAGGAG
GGCCTGACCG ACGGTGGCCC GACGCTGCCG CTGCCGCCGC GGACGCTGGC CGAGACGGTT
GACGACTTCG AGCGCAGCCT GATCGCCAGC GAACTGCGTC GCCAAGGCGG CAACCTGACC
CGCGTGGCCG AGGCGCTGAG CGTGGCCAAG ACCACGCTGC ACGACAAGGT GCGCCGCTAC
GGCTTGCTGA AGTGA
 
Protein sequence
MKTDLTVLII EDDAHMRLGC VQVMQLAGIQ VQGFGSAEEA LRLVKPGFHG VIVTDMRLPG 
MDGMAVIKRC RQLDADLPVL VITGHGDITM AVDSMRSGAY DFITKPFAPE LLLEVVQRAL
EKRALTLEIS NLRERLARLE GVEGKLIGIS PQMERVRRLV MEVADSPVDV LIRGETGAGK
ELVAQALHQL SRRKSAPYVA LNCGGLPENL LDSELFGHEA GAFTGAQKRR IGKIEHANGG
TLFLDEVESM PTSVQIKLLR VLQERVIERL GSNAQIPVDC RIVAASKDDL FERAQRQTFR
ADLYYRLNVV AIDLPPLRER REDIPMLLEH FMLLAASRYG RPQPAVSALQ TSRLMAHSWP
GNVRELRNVA DCLVLGVMKE GLTDGGPTLP LPPRTLAETV DDFERSLIAS ELRRQGGNLT
RVAEALSVAK TTLHDKVRRY GLLK