Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2681 |
Symbol | |
ID | 6162843 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2944785 |
End bp | 2946119 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641665458 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_001791711 |
Protein GI | 171059362 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.818562 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACCG ACCTCACCGT CCTGATCATC GAAGACGACG CCCACATGCG CCTGGGCTGC GTGCAGGTGA TGCAACTCGC GGGCATCCAG GTGCAGGGCT TCGGCAGCGC CGAAGAGGCG CTGCGCCTCG TCAAGCCAGG TTTCCACGGT GTCATCGTCA CCGACATGCG ATTGCCCGGC ATGGACGGCA TGGCGGTGAT CAAGCGCTGC CGCCAGCTCG ATGCCGACCT GCCGGTGCTC GTCATCACCG GCCACGGCGA CATCACGATG GCGGTCGATT CGATGCGCAG CGGCGCCTAC GATTTCATCA CCAAGCCCTT CGCACCGGAG CTGCTGCTCG AGGTCGTGCA GCGGGCGCTG GAGAAGCGCG CGCTGACGCT GGAGATCTCC AACCTGCGCG AGCGCCTGGC CCGGCTCGAA GGGGTCGAGG GCAAGCTGAT CGGCATCTCG CCGCAGATGG AACGGGTGCG GCGCCTGGTG ATGGAAGTGG CCGACTCGCC GGTGGACGTG TTGATCCGCG GCGAGACCGG GGCCGGCAAG GAACTGGTGG CGCAGGCGCT GCACCAGCTC TCGCGCCGCA AGTCTGCGCC CTATGTCGCG CTGAACTGCG GCGGCCTGCC CGAGAACCTG CTCGACAGCG AGCTGTTCGG GCACGAGGCG GGCGCCTTCA CCGGCGCGCA GAAGCGCCGC ATCGGCAAGA TCGAGCACGC CAACGGCGGC ACGCTGTTCC TCGACGAGGT CGAGAGCATG CCCACCAGCG TGCAGATCAA GCTGCTGCGG GTGCTGCAGG AGCGGGTGAT CGAGCGGCTG GGTTCGAACG CGCAGATTCC GGTCGATTGC CGCATCGTGG CGGCGTCCAA GGACGACCTG TTCGAACGCG CGCAACGCCA GACCTTCCGC GCCGACCTGT ACTACCGGCT CAACGTCGTC GCCATCGACC TGCCGCCGCT GCGCGAACGC CGCGAGGACA TCCCGATGCT GCTGGAGCAC TTCATGCTGC TGGCCGCGAG CCGCTACGGC CGGCCGCAAC CCGCCGTCTC GGCCCTTCAG ACCAGCCGGC TGATGGCGCA TTCGTGGCCC GGCAATGTGC GTGAACTGCG CAATGTCGCC GATTGCCTGG TCCTTGGCGT CATGAAGGAG GGCCTGACCG ACGGTGGCCC GACGCTGCCG CTGCCGCCGC GGACGCTGGC CGAGACGGTT GACGACTTCG AGCGCAGCCT GATCGCCAGC GAACTGCGTC GCCAAGGCGG CAACCTGACC CGCGTGGCCG AGGCGCTGAG CGTGGCCAAG ACCACGCTGC ACGACAAGGT GCGCCGCTAC GGCTTGCTGA AGTGA
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Protein sequence | MKTDLTVLII EDDAHMRLGC VQVMQLAGIQ VQGFGSAEEA LRLVKPGFHG VIVTDMRLPG MDGMAVIKRC RQLDADLPVL VITGHGDITM AVDSMRSGAY DFITKPFAPE LLLEVVQRAL EKRALTLEIS NLRERLARLE GVEGKLIGIS PQMERVRRLV MEVADSPVDV LIRGETGAGK ELVAQALHQL SRRKSAPYVA LNCGGLPENL LDSELFGHEA GAFTGAQKRR IGKIEHANGG TLFLDEVESM PTSVQIKLLR VLQERVIERL GSNAQIPVDC RIVAASKDDL FERAQRQTFR ADLYYRLNVV AIDLPPLRER REDIPMLLEH FMLLAASRYG RPQPAVSALQ TSRLMAHSWP GNVRELRNVA DCLVLGVMKE GLTDGGPTLP LPPRTLAETV DDFERSLIAS ELRRQGGNLT RVAEALSVAK TTLHDKVRRY GLLK
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