More than 300 homologs were found in PanDaTox collection
for query gene M446_1249 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_1249  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
452 aa  920    Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4692  two component, sigma54 specific, Fis family transcriptional regulator  58.73 
 
 
453 aa  520  1e-146  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0995721 
 
 
-
 
NC_007298  Daro_0477  two component, sigma54 specific, Fis family transcriptional regulator  57.92 
 
 
443 aa  515  1.0000000000000001e-145  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0306  two component, sigma54 specific, Fis family transcriptional regulator  58.5 
 
 
453 aa  518  1.0000000000000001e-145  Burkholderia sp. 383  Bacteria  normal  0.794109  normal 
 
 
-
 
NC_010552  BamMC406_5221  two component, sigma54 specific, Fis family transcriptional regulator  58.96 
 
 
453 aa  514  1.0000000000000001e-145  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_4338  two component, sigma54 specific, Fis family transcriptional regulator  57.34 
 
 
456 aa  512  1e-144  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010524  Lcho_2681  two component, sigma54 specific, Fis family transcriptional regulator  58.37 
 
 
444 aa  513  1e-144  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.818562 
 
 
-
 
NC_010515  Bcenmc03_4926  two component, sigma54 specific, Fis family transcriptional regulator  58.28 
 
 
453 aa  510  1e-143  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4293  two component, sigma54 specific, Fis family transcriptional regulator  56.6 
 
 
448 aa  509  1e-143  Delftia acidovorans SPH-1  Bacteria  normal  0.475037  normal 
 
 
-
 
NC_007973  Rmet_0588  Fis family transcriptional regulator  58.73 
 
 
458 aa  509  1e-143  Cupriavidus metallidurans CH34  Bacteria  normal  0.651672  normal 
 
 
-
 
NC_008061  Bcen_3024  two component, sigma54 specific, Fis family transcriptional regulator  58.5 
 
 
453 aa  509  1e-143  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5342  two component, sigma54 specific, Fis family transcriptional regulator  58.5 
 
 
453 aa  509  1e-143  Burkholderia cenocepacia HI2424  Bacteria  normal  0.71249  normal  0.508922 
 
 
-
 
NC_007005  Psyr_3913  helix-turn-helix, Fis-type  57.89 
 
 
442 aa  508  9.999999999999999e-143  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.289305  normal  0.253976 
 
 
-
 
NC_007908  Rfer_3453  two component, sigma54 specific, Fis family transcriptional regulator  57.33 
 
 
445 aa  506  9.999999999999999e-143  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5669  two component, sigma54 specific, Fis family transcriptional regulator  58.37 
 
 
454 aa  504  1e-141  Burkholderia phymatum STM815  Bacteria  normal  0.946519  normal 
 
 
-
 
NC_002947  PP_1066  two component, sigma54 specific, transcriptional regulator, Fis family  57.89 
 
 
442 aa  501  1e-141  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4176  sigma-54 dependent transcriptional regulator/response regulator  57.44 
 
 
442 aa  501  1e-141  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.999918  n/a   
 
 
-
 
NC_007347  Reut_A2669  two component, sigma54 specific, Fis family transcriptional regulator  57.37 
 
 
439 aa  503  1e-141  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3388  two component, sigma54 specific, Fis family transcriptional regulator  58.05 
 
 
453 aa  503  1e-141  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1107  two component, sigma54 specific, Fis family transcriptional regulator  57.89 
 
 
442 aa  501  1e-140  Pseudomonas putida F1  Bacteria  normal  normal  0.248973 
 
 
-
 
NC_010322  PputGB1_4346  two component, sigma54 specific, Fis family transcriptional regulator  57.44 
 
 
442 aa  499  1e-140  Pseudomonas putida GB-1  Bacteria  normal  0.788839  normal 
 
 
-
 
NC_010501  PputW619_1095  two component, sigma54 specific, Fis family transcriptional regulator  57.21 
 
 
442 aa  496  1e-139  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4050  putative two-component response regulator  56.4 
 
 
441 aa  489  1e-137  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0275  helix-turn-helix, Fis-type  55.33 
 
 
441 aa  486  1e-136  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4540  two component, sigma-54 specific, Fis family transcriptional regulator  55.66 
 
 
442 aa  488  1e-136  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.203781  normal  0.155775 
 
 
-
 
NC_009720  Xaut_3936  two component, sigma54 specific, Fis family transcriptional regulator  55.08 
 
 
441 aa  478  1e-134  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0230  Fis family transcriptional regulator  55.1 
 
 
444 aa  479  1e-134  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_0458  C4-dicarboxylate transport transcriptional response regulator DctD  56.4 
 
 
451 aa  474  1e-133  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1392  C4-dicarboxylate transport transcriptional regulatory protein  56.4 
 
 
451 aa  474  1e-133  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA3226  C4-dicarboxylate transport transcriptional regulatory protein  56.4 
 
 
451 aa  474  1e-133  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0642  C4-dicarboxylate transport transcriptional regulatory protein  56.4 
 
 
451 aa  474  1e-133  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0478  C4-dicarboxylate transport transcriptional response regulator DctD  56.4 
 
 
451 aa  474  1e-133  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0201  C4-dicarboxylate transport transcriptional regulatory protein  56.4 
 
 
451 aa  474  1e-133  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_5345  two component, sigma54 specific, transcriptional regulator, Fis family  55.91 
 
 
455 aa  477  1e-133  Variovorax paradoxus S110  Bacteria  normal  0.464024  n/a   
 
 
-
 
NC_007651  BTH_I0401  C4-dicarboxylate transport transcriptional regulatory protein  56.63 
 
 
451 aa  477  1e-133  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2818  C4-dicarboxylate transport transcriptional regulatory protein  56.4 
 
 
451 aa  474  1e-133  Burkholderia mallei NCTC 10247  Bacteria  normal  0.896177  n/a   
 
 
-
 
NC_007298  Daro_2148  helix-turn-helix, Fis-type  55.53 
 
 
442 aa  472  1e-132  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.383237 
 
 
-
 
NC_008463  PA14_46990  putative two-component response regulator  57.14 
 
 
425 aa  474  1e-132  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0103448  normal  0.161007 
 
 
-
 
NC_010508  Bcenmc03_2882  two component, sigma54 specific, Fis family transcriptional regulator  55.76 
 
 
450 aa  471  1.0000000000000001e-131  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.486122  normal 
 
 
-
 
NC_010084  Bmul_0432  two component, sigma54 specific, Fis family transcriptional regulator  55.98 
 
 
450 aa  469  1.0000000000000001e-131  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2257  two component, sigma54 specific, Fis family transcriptional regulator  55.76 
 
 
450 aa  470  1.0000000000000001e-131  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_2926  two component, sigma54 specific, Fis family transcriptional regulator  55.86 
 
 
451 aa  468  1.0000000000000001e-131  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2871  two component, sigma54 specific, Fis family transcriptional regulator  55.76 
 
 
450 aa  470  1.0000000000000001e-131  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0598017  n/a   
 
 
-
 
NC_010551  BamMC406_2788  two component, sigma54 specific, Fis family transcriptional regulator  55.86 
 
 
451 aa  468  1.0000000000000001e-131  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0194  two component, sigma54 specific, transcriptional regulator, Fis family  54.32 
 
 
438 aa  465  9.999999999999999e-131  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0392315 
 
 
-
 
NC_007510  Bcep18194_A6213  two component, sigma54 specific, Fis family transcriptional regulator  55.41 
 
 
451 aa  467  9.999999999999999e-131  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1258  sigma-54 factor interaction domain-containing protein  53.72 
 
 
451 aa  464  1e-129  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.438925 
 
 
-
 
NC_003295  RSc0332  C4-dicarboxylate transport response regulator transcription regulator protein  54.55 
 
 
438 aa  464  1e-129  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0188  two component, sigma54 specific, transcriptional regulator, Fis family  54.09 
 
 
438 aa  462  1e-129  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1419  two component, sigma54 specific, transcriptional regulator, Fis family  53.72 
 
 
451 aa  464  1e-129  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.895196 
 
 
-
 
NC_010622  Bphy_0227  two component, sigma54 specific, Fis family transcriptional regulator  55.13 
 
 
452 aa  461  9.999999999999999e-129  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0520  two component, sigma54 specific, transcriptional regulator, Fis family  55.94 
 
 
450 aa  460  9.999999999999999e-129  Burkholderia phytofirmans PsJN  Bacteria  normal  0.150741  normal 
 
 
-
 
NC_007951  Bxe_A4195  two component, sigma-54 specific, Fis family transcriptional regulator  55.25 
 
 
450 aa  457  1e-127  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.314648 
 
 
-
 
NC_010725  Mpop_1208  two component, sigma54 specific, transcriptional regulator, Fis family  53.51 
 
 
458 aa  454  1.0000000000000001e-126  Methylobacterium populi BJ001  Bacteria  normal  0.320827  normal  0.373488 
 
 
-
 
NC_009654  Mmwyl1_0915  two component, sigma54 specific, Fis family transcriptional regulator  50.33 
 
 
452 aa  450  1e-125  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  51.45 
 
 
461 aa  448  1e-125  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  50.68 
 
 
444 aa  446  1.0000000000000001e-124  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_003296  RSp0009  response regulator of the C4-dicarboxylate transport two-component regulatory system transcription regulator protein  55.25 
 
 
454 aa  446  1.0000000000000001e-124  Ralstonia solanacearum GMI1000  Bacteria  normal  0.313287  normal 
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  50.91 
 
 
444 aa  447  1.0000000000000001e-124  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_011757  Mchl_3285  two component, sigma54 specific, transcriptional regulator, Fis family  53.32 
 
 
450 aa  444  1e-123  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_3789  two component, sigma54 specific, transcriptional regulator, Fis family  54.3 
 
 
452 aa  442  1e-123  Ralstonia pickettii 12J  Bacteria  normal  normal  0.146089 
 
 
-
 
NC_012857  Rpic12D_3902  two component, sigma54 specific, transcriptional regulator, Fis family  54.3 
 
 
452 aa  442  1e-123  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_03680  C4 dicarboxylate two-component response regulator, sigma54-dependent; DctD2  51.69 
 
 
461 aa  442  1e-123  Azotobacter vinelandii DJ  Bacteria  normal  0.0105245  n/a   
 
 
-
 
NC_010322  PputGB1_4410  two component, sigma54 specific, Fis family transcriptional regulator  50 
 
 
444 aa  444  1e-123  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_72720  putative two-component response regulator  52.95 
 
 
447 aa  442  1e-123  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.269979  normal 
 
 
-
 
NC_010501  PputW619_1042  two component, sigma54 specific, Fis family transcriptional regulator  51.03 
 
 
444 aa  440  9.999999999999999e-123  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4294  two component, sigma54 specific, Fis family transcriptional regulator  51.48 
 
 
461 aa  441  9.999999999999999e-123  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.595978 
 
 
-
 
NC_009720  Xaut_4048  two component, sigma54 specific, Fis family transcriptional regulator  51.47 
 
 
459 aa  440  9.999999999999999e-123  Xanthobacter autotrophicus Py2  Bacteria  normal  0.650008  normal  0.353812 
 
 
-
 
NC_009620  Smed_4176  two component, sigma54 specific, Fis family transcriptional regulator  49.43 
 
 
452 aa  437  1e-121  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.280959 
 
 
-
 
NC_009668  Oant_3478  two component, sigma54 specific, Fis family transcriptional regulator  50.22 
 
 
450 aa  437  1e-121  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3061  sigma-54 factor interaction domain-containing protein  52.63 
 
 
450 aa  436  1e-121  Methylobacterium extorquens PA1  Bacteria  normal  0.305462  normal 
 
 
-
 
NC_010511  M446_4770  two component, sigma54 specific, Fis family transcriptional regulator  52.73 
 
 
446 aa  435  1e-121  Methylobacterium sp. 4-46  Bacteria  normal  0.133057  normal  0.593625 
 
 
-
 
NC_010725  Mpop_3260  two component, sigma54 specific, transcriptional regulator, Fis family  52.86 
 
 
450 aa  437  1e-121  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0287  two component, sigma-54 specific, Fis family transcriptional regulator  51.46 
 
 
462 aa  432  1e-120  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.378858 
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  51.38 
 
 
442 aa  434  1e-120  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_009656  PSPA7_6313  putative two-component response regulator  51.94 
 
 
447 aa  433  1e-120  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  50.91 
 
 
446 aa  432  1e-120  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_008463  PA14_68250  two-component response regulator  51.26 
 
 
462 aa  433  1e-120  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.371358  normal  0.144717 
 
 
-
 
NC_013456  VEA_004047  C4-dicarboxylate transport transcriptional regulatory protein  50.23 
 
 
445 aa  429  1e-119  Vibrio sp. Ex25  Bacteria  normal  0.114732  n/a   
 
 
-
 
NC_009457  VC0395_A1516  C4-dicarboxylate transport transcriptional regulatory protein  49.89 
 
 
446 aa  431  1e-119  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5905  two-component response regulator  51.26 
 
 
462 aa  431  1e-119  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2347  two component, sigma54 specific, Fis family transcriptional regulator  50.34 
 
 
450 aa  430  1e-119  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0278  two component, sigma54 specific, Fis family transcriptional regulator  50 
 
 
468 aa  426  1e-118  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0263  two component, sigma54 specific, transcriptional regulator, Fis family  50 
 
 
468 aa  427  1e-118  Pseudomonas putida KT2440  Bacteria  normal  0.513605  normal  0.0177919 
 
 
-
 
NC_004578  PSPTO_4292  sigma-54 dependent transcriptional regulator/response regulator  49.66 
 
 
444 aa  426  1e-118  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3995  helix-turn-helix, Fis-type  50 
 
 
444 aa  426  1e-118  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0385153 
 
 
-
 
NC_012850  Rleg_2980  two component, sigma54 specific, transcriptional regulator, Fis family  51.25 
 
 
448 aa  425  1e-118  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0718905 
 
 
-
 
NC_011369  Rleg2_2719  two component, sigma54 specific, transcriptional regulator, Fis family  50.9 
 
 
448 aa  425  1e-118  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2213  response regulator receiver protein  48.65 
 
 
461 aa  422  1e-117  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2013  C4-dicarboxylate transport transcriptional regulatory protein  47.84 
 
 
453 aa  422  1e-117  Colwellia psychrerythraea 34H  Bacteria  normal  0.618445  n/a   
 
 
-
 
NC_010322  PputGB1_0288  two component, sigma54 specific, Fis family transcriptional regulator  49.32 
 
 
468 aa  422  1e-117  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_6228  two component response regulator for C4-dicarboxylate transport  49.21 
 
 
458 aa  424  1e-117  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2810  two component, sigma54 specific, Fis family transcriptional regulator  47.88 
 
 
459 aa  418  1e-116  Shewanella baltica OS155  Bacteria  normal  0.776829  n/a   
 
 
-
 
NC_010501  PputW619_4947  two component, sigma54 specific, Fis family transcriptional regulator  49.66 
 
 
469 aa  421  1e-116  Pseudomonas putida W619  Bacteria  normal  0.669147  hitchhiker  0.0000241398 
 
 
-
 
NC_008709  Ping_0712  C4-dicarboxylate transport sigma-54 regulatory protein  49.09 
 
 
446 aa  419  1e-116  Psychromonas ingrahamii 37  Bacteria  normal  0.212594  normal 
 
 
-
 
NC_004578  PSPTO_5399  sigma-54 dependent transcriptional regulator/response regulator  50.23 
 
 
461 aa  420  1e-116  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0369  two component, sigma54 specific, Fis family transcriptional regulator  51.13 
 
 
451 aa  420  1e-116  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1548  two component, sigma54 specific, transcriptional regulator, Fis family  47.88 
 
 
459 aa  419  1e-116  Shewanella baltica OS223  Bacteria  normal  0.816634  normal 
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  49.66 
 
 
446 aa  420  1e-116  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4938  helix-turn-helix, Fis-type  49.45 
 
 
463 aa  418  9.999999999999999e-116  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
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