| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6228 |
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| Symbol | dctD |
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| ID | 7381274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1223523 |
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| End bp | 1224899 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649696 |
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| Product | two component response regulator for C4-dicarboxylate transport |
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| Protein accession | YP_002547920 |
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| Protein GI | 222107129 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTCAT CGCAAGCGAC GGCGACCAAT AATGTGATCC TGATTGATAA TGATCGAGAT
CTACTGGCGG CCACGGGGCA GACCCTTGAG CTGGCGGGCT TCTCCGTGCA GGCGTTTTCA
GCGCCGCTGG ATGCGCTGCG TCGGATTTCC AGTGATTTTC GCGGTGTCAT CGTTTCGGAT
ATTCGAATGC CTGATATCGA CGGCTTGGAA TTGTTCAGCA GGGTCAAGGC AATGGACCCG
GAATTGCCGG TCATTCTGGT CACCGGCCAT GGCGATATCG CCATGGCGGT ACAGGCGATC
AAGGACGGCA CTTATGATTT CATCACGAAG CCCTTTGCCA CCGACAGGCT CCAACAGAGT
GTTCATCGCG CCGCGGAAAT GCGACGGCTC GTGCTGGAAA ATCGCAAGCT GCGTCAGGTG
GCAGACGCGG CCCAGGATGG ATTGCCGCTG ATTGGCCAGA CCCCTGCCAT GGAACGGCTA
CGGCGCACTT TGCGCCAGAT CGCCGATACC GACGTCGATG TGTTGGTGAC AGGCGAAACC
GGCAGCGGCA AGGAAGTGGT GGCGAGCCTG CTACACAGCT GGAGCCGACG CGCCAAGGGC
AATTTTGTCG CCTTGAACTG CGGAACCCTG CCGGAAAGCA TGATCGAAAG CGAGTTGTTC
GGCCACGAGG CCGGCGCCTT TACCGGTGCG CAGAAAAAGC GGATCGGCCG GATCGAACAT
GCCAGCGGCG GCACATTGTT TCTCGACGAA ATCGAGAGCA TGCCTGCCGC GACCCAGGTG
CAGATGCTGC GGGTACTGGA AATGCGGGAA GTCTCGCCGC TCGGCATCAA CGACGTGCGC
CCGGTGGACC TGCGCGTGGT CGCCGCGGCC AAAGTCGATC TCAGTGATCC TGCCCAGCGC
GGTGAATTCC GCGAGGACCT TTATTACCGC CTGAATGTCG TGACATTGAC CATCCCGCCG
TTGCGCGAGC GCCGTGATGA CGTGCCGCTG TTGTTTGCCC ATTTCATCGA GCGGGCCGCT
AGCCGGTTCC GGCGCGAGCC ACCGCCGGTG TCAGCTGGTG TCGAGCGTTA TTTGCGAGAT
CATGACTGGC CGGGAAATGT GCGTGAATTG ACGCATTTTG CCGAACGCTT CGTTCTGGGG
CTGGAAGATA TGGATTCGGG CGGCAGTAGT GTCGTTTTAG TCGACCTGCC TGATTTATCC
TTGCCGGAGC GGCTGGATCG CTATGAGGCG GATATCATGC GTGAGACCCT TAGCCACTAT
GAGGGTGATG TACGCAAGAC CATCGAGGCT CTGAAAATTC CTCGCAAGAC CTTTTACGAC
AAACTTCAGC GTCATGGCAT TGTCCGCAAG GCATTTGCGG GTGGGGAAGA AGGCTGA
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| Protein sequence | MTSSQATATN NVILIDNDRD LLAATGQTLE LAGFSVQAFS APLDALRRIS SDFRGVIVSD
IRMPDIDGLE LFSRVKAMDP ELPVILVTGH GDIAMAVQAI KDGTYDFITK PFATDRLQQS
VHRAAEMRRL VLENRKLRQV ADAAQDGLPL IGQTPAMERL RRTLRQIADT DVDVLVTGET
GSGKEVVASL LHSWSRRAKG NFVALNCGTL PESMIESELF GHEAGAFTGA QKKRIGRIEH
ASGGTLFLDE IESMPAATQV QMLRVLEMRE VSPLGINDVR PVDLRVVAAA KVDLSDPAQR
GEFREDLYYR LNVVTLTIPP LRERRDDVPL LFAHFIERAA SRFRREPPPV SAGVERYLRD
HDWPGNVREL THFAERFVLG LEDMDSGGSS VVLVDLPDLS LPERLDRYEA DIMRETLSHY
EGDVRKTIEA LKIPRKTFYD KLQRHGIVRK AFAGGEEG
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