Gene Pput_1107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1107 
Symbol 
ID5192826 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1249243 
End bp1250571 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content63% 
IMG OID640585565 
Producttwo component, sigma54 specific, Fis family transcriptional regulator 
Protein accessionYP_001266452 
Protein GI148546350 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.248973 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCAAG CGCCTCTTAC CGTCCTGATT GTCGAAGACG ACCCGCATGT GCTGCTCGGC 
TGCCAGCAGG CGCTGGCCCT GGAGGATATC GCCTGCGAGG GCGTGGGCAG CGCCGAACAG
GCGCTGGAGC GCATTGGCGA CGATTTCGCC GGCATTGTCG TCAGCGATAT CCGCTTGCCG
GGTATTGATG GCCTGGAGCT GCTCAATCGC CTTAAGGCCC GTGACCGCAG CCTGCCGGTG
GTGCTGATCA CTGGCCATGG CGATATCGAC ATGGCCGTCG GCGCCATGCG TAACGGCGCC
TACGACTTCA TGGAAAAACC GTTCTCCCCC GAGCGCCTGG TCGATGTAGT ACGCCGCGCG
TTGGAACAGC GCGGGCTGTC ACGCGAAGTA GTGGCCCTGC GCCGCCAGCT GGCCGAGCAG
AACAGCCTGG AGGGACGCAT CATTGGTCGC TCACCGGCCA TGGAGCACTT GCGCGAACTG
ATCGCCAACG TCGCCGACAC CTCAGCCAAC GTGCTGATCG AAGGTGAAAC CGGCACCGGC
AAAGAGCTGG TCGCGCGCTG CCTGCACGAC TTCAGTCGTC GCCAGAGCCA CCCGTTCGTG
GCGCTGAACT GTGGCGGCCT GCCGGAAAAC CTGTTTGAAA GCGAGATATT CGGCCACGAG
GCCAACGCCT TCACCGGAGC CGGCAAACGC CGCATCGGCA AGATCGAACA CGCCAATGGC
GGCACGCTGT TCCTCGATGA AGTGGAGAGC ATGCCGATCA ACCTGCAGAT CAAGCTGCTG
CGCGTGCTGC AGGAGCGCAC CCTGGAGCGA TTGGGCTCGA ACCAGAGCAT CCCGGTGGAT
TGCCGGGTGA TCGCCGCGAC GAAGGCCGAC CTCGATGCCT TGGGCCAGAG CGGCCAGTTC
CGCAGCGACC TGTATTACCG GTTGAACGTG GTCACCCTGG AGCTGCCGCC GCTGCGTGAG
CGCCGTGAAG ACATCCTGCA GTTGTTCGAA CATTTCCTGC AGCAGTCGGC GCTGCGGTTC
GACCGGGAAA CACCGACACT GGACAGCCAG ACCCTGTCAC GCCTGATGGC CCATGACTGG
CCGGGTAACG TGCGCGAGTT GCGCAACGTG GCCGAACGCT ATGCCCTCGG CCTGCCAGCC
TTCAAGAAAG GCCCCAGCGG AGGTGCCAAC CAAGGCCTGC TTTTTGCCGA GGCGGTGGAA
GCATTCGAAC GCAACCTGCT CACTGATGCC CTGCAACGCA CAGGTGGCAA CCTGAGCCAG
GCCAGCCAGG AGCTGGGCAT GGCCAAGACC ACGCTGTTCG ACAAAGTGAA AAAATACGGC
CTCGCCTGA
 
Protein sequence
MNQAPLTVLI VEDDPHVLLG CQQALALEDI ACEGVGSAEQ ALERIGDDFA GIVVSDIRLP 
GIDGLELLNR LKARDRSLPV VLITGHGDID MAVGAMRNGA YDFMEKPFSP ERLVDVVRRA
LEQRGLSREV VALRRQLAEQ NSLEGRIIGR SPAMEHLREL IANVADTSAN VLIEGETGTG
KELVARCLHD FSRRQSHPFV ALNCGGLPEN LFESEIFGHE ANAFTGAGKR RIGKIEHANG
GTLFLDEVES MPINLQIKLL RVLQERTLER LGSNQSIPVD CRVIAATKAD LDALGQSGQF
RSDLYYRLNV VTLELPPLRE RREDILQLFE HFLQQSALRF DRETPTLDSQ TLSRLMAHDW
PGNVRELRNV AERYALGLPA FKKGPSGGAN QGLLFAEAVE AFERNLLTDA LQRTGGNLSQ
ASQELGMAKT TLFDKVKKYG LA