Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1107 |
Symbol | |
ID | 5192826 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 1249243 |
End bp | 1250571 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640585565 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_001266452 |
Protein GI | 148546350 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.248973 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCAAG CGCCTCTTAC CGTCCTGATT GTCGAAGACG ACCCGCATGT GCTGCTCGGC TGCCAGCAGG CGCTGGCCCT GGAGGATATC GCCTGCGAGG GCGTGGGCAG CGCCGAACAG GCGCTGGAGC GCATTGGCGA CGATTTCGCC GGCATTGTCG TCAGCGATAT CCGCTTGCCG GGTATTGATG GCCTGGAGCT GCTCAATCGC CTTAAGGCCC GTGACCGCAG CCTGCCGGTG GTGCTGATCA CTGGCCATGG CGATATCGAC ATGGCCGTCG GCGCCATGCG TAACGGCGCC TACGACTTCA TGGAAAAACC GTTCTCCCCC GAGCGCCTGG TCGATGTAGT ACGCCGCGCG TTGGAACAGC GCGGGCTGTC ACGCGAAGTA GTGGCCCTGC GCCGCCAGCT GGCCGAGCAG AACAGCCTGG AGGGACGCAT CATTGGTCGC TCACCGGCCA TGGAGCACTT GCGCGAACTG ATCGCCAACG TCGCCGACAC CTCAGCCAAC GTGCTGATCG AAGGTGAAAC CGGCACCGGC AAAGAGCTGG TCGCGCGCTG CCTGCACGAC TTCAGTCGTC GCCAGAGCCA CCCGTTCGTG GCGCTGAACT GTGGCGGCCT GCCGGAAAAC CTGTTTGAAA GCGAGATATT CGGCCACGAG GCCAACGCCT TCACCGGAGC CGGCAAACGC CGCATCGGCA AGATCGAACA CGCCAATGGC GGCACGCTGT TCCTCGATGA AGTGGAGAGC ATGCCGATCA ACCTGCAGAT CAAGCTGCTG CGCGTGCTGC AGGAGCGCAC CCTGGAGCGA TTGGGCTCGA ACCAGAGCAT CCCGGTGGAT TGCCGGGTGA TCGCCGCGAC GAAGGCCGAC CTCGATGCCT TGGGCCAGAG CGGCCAGTTC CGCAGCGACC TGTATTACCG GTTGAACGTG GTCACCCTGG AGCTGCCGCC GCTGCGTGAG CGCCGTGAAG ACATCCTGCA GTTGTTCGAA CATTTCCTGC AGCAGTCGGC GCTGCGGTTC GACCGGGAAA CACCGACACT GGACAGCCAG ACCCTGTCAC GCCTGATGGC CCATGACTGG CCGGGTAACG TGCGCGAGTT GCGCAACGTG GCCGAACGCT ATGCCCTCGG CCTGCCAGCC TTCAAGAAAG GCCCCAGCGG AGGTGCCAAC CAAGGCCTGC TTTTTGCCGA GGCGGTGGAA GCATTCGAAC GCAACCTGCT CACTGATGCC CTGCAACGCA CAGGTGGCAA CCTGAGCCAG GCCAGCCAGG AGCTGGGCAT GGCCAAGACC ACGCTGTTCG ACAAAGTGAA AAAATACGGC CTCGCCTGA
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Protein sequence | MNQAPLTVLI VEDDPHVLLG CQQALALEDI ACEGVGSAEQ ALERIGDDFA GIVVSDIRLP GIDGLELLNR LKARDRSLPV VLITGHGDID MAVGAMRNGA YDFMEKPFSP ERLVDVVRRA LEQRGLSREV VALRRQLAEQ NSLEGRIIGR SPAMEHLREL IANVADTSAN VLIEGETGTG KELVARCLHD FSRRQSHPFV ALNCGGLPEN LFESEIFGHE ANAFTGAGKR RIGKIEHANG GTLFLDEVES MPINLQIKLL RVLQERTLER LGSNQSIPVD CRVIAATKAD LDALGQSGQF RSDLYYRLNV VTLELPPLRE RREDILQLFE HFLQQSALRF DRETPTLDSQ TLSRLMAHDW PGNVRELRNV AERYALGLPA FKKGPSGGAN QGLLFAEAVE AFERNLLTDA LQRTGGNLSQ ASQELGMAKT TLFDKVKKYG LA
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