| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2912 |
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| Symbol | |
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| ID | 5610024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3522652 |
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| End bp | 3524019 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933852 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_001474647 |
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| Protein GI | 157376047 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTCA ATAATTTGGA TAACATCAAA GTGCTCATCG TCGATGATGA GCCTTTAATC
GGTTCAGCTC TAATGCAGCT ATTTGAATTA GAAGGCATTC CAGCATTTGC CACTTCTACG
CCCAAGAGCT TACCGGAACA GATCCACCTG AATTGGCCCG GTGTCGTCAT TACTGACGTC
AATATGCCTC AGCTTGATGG CATCTCCCTG ATGCGTAACC TACAAACAAA AGATAAAGAT
CTGCCCATTA TACTACTCAC AGGCTTCGGC GATATAGCCA TGGCAGTGCA AGCACTTAAA
CAAGGTGCCT ACGATTTTCT GGAAAAACCA TTCAACAATG AACATATTCT GGATGTGGTG
AAACGGGCCT TAGAAAAAAG AGAGTTAACC CTAGAAAACC GAAAGCTGAA GAGAGAACTG
GAATCACAGA GTCTGCCGGG TCCAAGAATA TTGGGCCACA GCCCCGGCAT TGAACAGATG
AAGCACATCA TACATCAGGT TATCGATATG CCAGCCGATG TGCTCATTGA GGGGGAAACC
GGAACGGGGA AAGAGTTAGT CGCACGCTAC CTGCACGATC ACAGCGTCCG TCATCAGGCT
AACTTTGTGG CCATAAACTG CGGGGCGATA CCGGAAACTA TCATAGAAAG TGAGTTATTC
GGGGCTGAAT CAGGGGCATT TACCGGTGCC GATAAAACCC GTATCGGTAA ATTCGAATAT
GCCAATGGTG GAACCATCTT TCTCGATGAG ATTGAAAGCA CGCCGCTCTC ATTGCAGATA
AAACTGCTAA GAGTCCTGGA AGATAGAAAA GTCGAACGAC TCGGTTCAAA CAGGAGTATT
GAACTCGATA TTCGGGTCAT TGCCGCCACT AAGGTCGACT TGGCGCAATT GTGTAAAACC
GGTGAGTTCA GGCAGGACCT GCTTTACCGA TTAAACTTAG TCACGGTGCC TATTCCTGCT
CTGCGAGAGA GGCGCGAAGA TATCGGTCTG CTGTTTTTAC ATTTCGCTCG CGTTGCCTCA
TCCCGTTACC ATAAGGCTCT GATCGCACTC AACGCGCAGC AGATGACTCA ACTGGCCTCA
CATGATTGGC CCGGAAATGT AAGAGAGCTC AGAAATTTGG CCGAACGCTA TGTGCTCCTC
GGAGGAGAAG CCGCTTTTGC CACATCAATA AACAGCTCTG TAAATCTCAA CTGTGGTATG
TCGCTGCAAC AAAGGGTGGA GTTTTTTGAA CGACTCCTGA TTGAAGAGGC GCTGAGTCAC
AACAAGGGCA GCATCAAGCT CACCATGGAA CAACTGGAAG TGCCTCGTAA GACACTCTAT
GACAAGATGC AAAAATATGA ACTAGACCGT AAGCGCTTCA TTCAATAA
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| Protein sequence | MNLNNLDNIK VLIVDDEPLI GSALMQLFEL EGIPAFATST PKSLPEQIHL NWPGVVITDV
NMPQLDGISL MRNLQTKDKD LPIILLTGFG DIAMAVQALK QGAYDFLEKP FNNEHILDVV
KRALEKRELT LENRKLKREL ESQSLPGPRI LGHSPGIEQM KHIIHQVIDM PADVLIEGET
GTGKELVARY LHDHSVRHQA NFVAINCGAI PETIIESELF GAESGAFTGA DKTRIGKFEY
ANGGTIFLDE IESTPLSLQI KLLRVLEDRK VERLGSNRSI ELDIRVIAAT KVDLAQLCKT
GEFRQDLLYR LNLVTVPIPA LRERREDIGL LFLHFARVAS SRYHKALIAL NAQQMTQLAS
HDWPGNVREL RNLAERYVLL GGEAAFATSI NSSVNLNCGM SLQQRVEFFE RLLIEEALSH
NKGSIKLTME QLEVPRKTLY DKMQKYELDR KRFIQ
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