Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3138 |
Symbol | dctD |
ID | 1170827 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 3268059 |
End bp | 3269438 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637344953 |
Product | C4-dicarboxylate transport transcriptional regulatory protein |
Protein accession | NP_718697 |
Protein GI | 24374654 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGTGC CCAATTCAAT TCAAGACTAT AGCGTACTCA TCATCGACGA TGAGCCCCAT ATAGGCACAG TCCTAGTCCA ACTTTTTGAA CTGGAAGGTA TTAAAGCCTT CGCAGCCACA GATCCCAAAG GCATTGCCAA ACTACTCGAC AGAGACTGGG CTGGGGTGGT GATTTCTGAT GTCAATATGC CACAACTTGA TGGCATCAGT CTGATGCAGC AGATCCGTGA GCAAGATGCC GATTTACCTG TCGTACTACT TACCGGCTTT GGCGATATCG CCATGGCAGT CAATGCCCTA AAGCAAGGCG CCTACGACTT TCTCGAAAAA CCCTTTAACA ACGAACATAT GTTAGATGTG GTAAAACGCG CCCTAGATAA ACGCAGCCTT ACCCTCGAGA ACCGTAAGTT AAAGAAAGAG TTAGAAAGCC ATAATGTGCC GGGGCCGCGG ATATTAGGCC ACAGTGTTGG TATTCAACGT ATGCGCCATA TTATCGACCA AGTGATCGAC ACACCAGCCG ATGTGCTAAT CGAAGGTGAA ACCGGCACAG GTAAAGAATT AGTCGCCCGC TACTTACACG ACCACAGCAA TCGCAACCAA GCCAACTTCG TCGCCATTAA CTGCGGTGCC ATTCCTGAAA ACTTGATTGA GAGCGAGTTA TTTGGTGCCG AAGCGGGCGC GTTTACTGGC GTCGATAAGC TACGTATCGG TAAGTTTGAA TATGCCAATG GCGGCACCCT ATTTTTAGAT GAAATTGAAA GTACGCCGCT GTCGTTACAG GTTAAATTAC TGCGAGTATT GGAAGATCGT AAAGTCGAGC GCCTAGGCTC CAATAAAAGT ATTCACTTGG ATATTCGAGT GATCGCCGCC ACTAAGGTAG ATTTAAAGTC CCTGTGTGAT ACCGGACAAT TTCGTCAAGA TTTACTCTAT CGCTTAAATT TGGTCACAGT GCCCATCCCT CCACTTAGGG ATCGCCGCGA AGATATTCCC TTATTATTCT TACATTTTGC CCGTATGGCC TCGGCGCGTT ATCACAAGGC GTTAATTGCC CTGAATGCCG AGCAGAATGC CATTCTCACC TCCCACGATT GGCCTGGCAA TGTGCGCGAA CTTAGAAACC TTGCCGAGCG TTATGTGCTA CTCGGCGGCG AAGCCGCTTT TGCGGGCACC TTAGGCAATG CGCCCAGTTT GCATACCAGT ATGTCCTTGC TACAACGGGT CGAGTTTTTT GAGCGAGTGC TGATTGAAGA GGCGCTAAGC CATAATAAGG GCAGCATTAA GCTGACCATG GAACAACTCG AACTGCCGCG TAAAACCTTG TATGACAAGA TGCGTAAATA CGATTTAGAC CGCAAGCAAT ATATTAACGC CGACGAATAG
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Protein sequence | MSVPNSIQDY SVLIIDDEPH IGTVLVQLFE LEGIKAFAAT DPKGIAKLLD RDWAGVVISD VNMPQLDGIS LMQQIREQDA DLPVVLLTGF GDIAMAVNAL KQGAYDFLEK PFNNEHMLDV VKRALDKRSL TLENRKLKKE LESHNVPGPR ILGHSVGIQR MRHIIDQVID TPADVLIEGE TGTGKELVAR YLHDHSNRNQ ANFVAINCGA IPENLIESEL FGAEAGAFTG VDKLRIGKFE YANGGTLFLD EIESTPLSLQ VKLLRVLEDR KVERLGSNKS IHLDIRVIAA TKVDLKSLCD TGQFRQDLLY RLNLVTVPIP PLRDRREDIP LLFLHFARMA SARYHKALIA LNAEQNAILT SHDWPGNVRE LRNLAERYVL LGGEAAFAGT LGNAPSLHTS MSLLQRVEFF ERVLIEEALS HNKGSIKLTM EQLELPRKTL YDKMRKYDLD RKQYINADE
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