Gene SO_3138 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3138 
SymboldctD 
ID1170827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp3268059 
End bp3269438 
Gene Length1380 bp 
Protein Length459 aa 
Translation table11 
GC content48% 
IMG OID637344953 
ProductC4-dicarboxylate transport transcriptional regulatory protein 
Protein accessionNP_718697 
Protein GI24374654 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGTGC CCAATTCAAT TCAAGACTAT AGCGTACTCA TCATCGACGA TGAGCCCCAT 
ATAGGCACAG TCCTAGTCCA ACTTTTTGAA CTGGAAGGTA TTAAAGCCTT CGCAGCCACA
GATCCCAAAG GCATTGCCAA ACTACTCGAC AGAGACTGGG CTGGGGTGGT GATTTCTGAT
GTCAATATGC CACAACTTGA TGGCATCAGT CTGATGCAGC AGATCCGTGA GCAAGATGCC
GATTTACCTG TCGTACTACT TACCGGCTTT GGCGATATCG CCATGGCAGT CAATGCCCTA
AAGCAAGGCG CCTACGACTT TCTCGAAAAA CCCTTTAACA ACGAACATAT GTTAGATGTG
GTAAAACGCG CCCTAGATAA ACGCAGCCTT ACCCTCGAGA ACCGTAAGTT AAAGAAAGAG
TTAGAAAGCC ATAATGTGCC GGGGCCGCGG ATATTAGGCC ACAGTGTTGG TATTCAACGT
ATGCGCCATA TTATCGACCA AGTGATCGAC ACACCAGCCG ATGTGCTAAT CGAAGGTGAA
ACCGGCACAG GTAAAGAATT AGTCGCCCGC TACTTACACG ACCACAGCAA TCGCAACCAA
GCCAACTTCG TCGCCATTAA CTGCGGTGCC ATTCCTGAAA ACTTGATTGA GAGCGAGTTA
TTTGGTGCCG AAGCGGGCGC GTTTACTGGC GTCGATAAGC TACGTATCGG TAAGTTTGAA
TATGCCAATG GCGGCACCCT ATTTTTAGAT GAAATTGAAA GTACGCCGCT GTCGTTACAG
GTTAAATTAC TGCGAGTATT GGAAGATCGT AAAGTCGAGC GCCTAGGCTC CAATAAAAGT
ATTCACTTGG ATATTCGAGT GATCGCCGCC ACTAAGGTAG ATTTAAAGTC CCTGTGTGAT
ACCGGACAAT TTCGTCAAGA TTTACTCTAT CGCTTAAATT TGGTCACAGT GCCCATCCCT
CCACTTAGGG ATCGCCGCGA AGATATTCCC TTATTATTCT TACATTTTGC CCGTATGGCC
TCGGCGCGTT ATCACAAGGC GTTAATTGCC CTGAATGCCG AGCAGAATGC CATTCTCACC
TCCCACGATT GGCCTGGCAA TGTGCGCGAA CTTAGAAACC TTGCCGAGCG TTATGTGCTA
CTCGGCGGCG AAGCCGCTTT TGCGGGCACC TTAGGCAATG CGCCCAGTTT GCATACCAGT
ATGTCCTTGC TACAACGGGT CGAGTTTTTT GAGCGAGTGC TGATTGAAGA GGCGCTAAGC
CATAATAAGG GCAGCATTAA GCTGACCATG GAACAACTCG AACTGCCGCG TAAAACCTTG
TATGACAAGA TGCGTAAATA CGATTTAGAC CGCAAGCAAT ATATTAACGC CGACGAATAG
 
Protein sequence
MSVPNSIQDY SVLIIDDEPH IGTVLVQLFE LEGIKAFAAT DPKGIAKLLD RDWAGVVISD 
VNMPQLDGIS LMQQIREQDA DLPVVLLTGF GDIAMAVNAL KQGAYDFLEK PFNNEHMLDV
VKRALDKRSL TLENRKLKKE LESHNVPGPR ILGHSVGIQR MRHIIDQVID TPADVLIEGE
TGTGKELVAR YLHDHSNRNQ ANFVAINCGA IPENLIESEL FGAEAGAFTG VDKLRIGKFE
YANGGTLFLD EIESTPLSLQ VKLLRVLEDR KVERLGSNKS IHLDIRVIAA TKVDLKSLCD
TGQFRQDLLY RLNLVTVPIP PLRDRREDIP LLFLHFARMA SARYHKALIA LNAEQNAILT
SHDWPGNVRE LRNLAERYVL LGGEAAFAGT LGNAPSLHTS MSLLQRVEFF ERVLIEEALS
HNKGSIKLTM EQLELPRKTL YDKMRKYDLD RKQYINADE