Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1359 |
Symbol | |
ID | 4251378 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1580499 |
End bp | 1581878 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638117943 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_733494 |
Protein GI | 113969701 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0913399 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTCTGC CCAATTCAAT TCAAGACTAT AGCGTACTGA TCATCGACGA TGAGCCCCAT ATAGGCACAG TGCTCGTGCA GCTGTTTGAG TTGGAAGGCA TTAAAGCCTT CGCCACTACC GATCCCAAAG GGATCGCCAA ATTACTCGAC AGAGACTGGG CCGGAGTAGT GATTTCCGAT GTGAATATGC CGCAGCTCGA CGGCATCAGT TTGATGCAGC AAATTCGTCA GCAGGACCCC GATTTACCCG TGGTGCTGCT CACCGGCTTT GGCGATATCG CCATGGCGGT CAATGCGTTA AAACAAGGGG CCTACGATTT TCTCGAAAAA CCCTTTAATA ACGAACACAT GCTAGACGTG GTGAAGCGCG CCTTAGATAA ACGCAGCCTC ACCCTAGAGA ACCGTAAATT AAAGAAAGAG TTAGAAAGCC ATAACGTACC AGGCCCAAGG ATATTAGGCC ACAGCGTCGG CATTTTGCGC ATGCGTCACA TCATAGACCA AGTGATCGAC ACCCCCGCCG ATGTGCTTAT TGAAGGTGAA ACCGGTACGG GCAAGGAATT GGTCGCCCGC TATCTGCACG ACCACAGCAG TCGCAATCAA GCCAACTTTG TGGCAATTAA CTGCGGCGCG ATTCCCGAAA ACTTGATTGA GAGCGAGCTA TTTGGCGCCG AAGCTGGCGC CTTTACCGGT GTCGATAAAC TGCGTGTCGG CAAGTTTGAA TACGCCAATG GCGGCACACT CTTTTTAGAT GAAATCGAAA GCACGCCGCT GTCGTTACAG GTCAAACTGC TGCGGGTGCT CGAAGATCGT AAGGTCGAAC GCCTAGGCTC CAATAAAAGC ATTCATCTGG ATATTCGGGT AATTGCCGCC ACTAAGGTGG ATTTAAAGTC CCTGTGCGAC ACCGGAGAGT TTCGCCAAGA CCTGCTCTAT CGCTTAAATC TGGTGACTGT GCCCATTCCA CCACTCAGAG ATCGCCGCGA AGATATTCCC TTATTATTCT TACATTTTGC CCGTATGGCC TCGGCGCGCT ATCACAAGGC CTTAATTGCC CTCAATGCCG AGCAGAATGC TATCCTCAGC TCCCACGACT GGCCGGGTAA TGTGCGTGAG CTGCGAAATC TGGCCGAACG TTATGTGTTA CTCGGTGGCG AAGCCGCCTT CGCAGGCACC TTAGGCAACG CGCCCAGTCT GCATACCAGT ATGTCATTGC TGCAACGGGT CGAGTTTTTT GAGCGGGTAT TGATTGAAGA AGCCTTAAGC CATAACAAGG GAAGCATTAA GCAGACAATG GAGCAACTCG AACTGCCCCG CAAAACCTTA TACGACAAGA TGCGTAAATA CGATTTAGAC CGCAAGCAAT ATATCAACGC CGACGAATAA
|
Protein sequence | MSLPNSIQDY SVLIIDDEPH IGTVLVQLFE LEGIKAFATT DPKGIAKLLD RDWAGVVISD VNMPQLDGIS LMQQIRQQDP DLPVVLLTGF GDIAMAVNAL KQGAYDFLEK PFNNEHMLDV VKRALDKRSL TLENRKLKKE LESHNVPGPR ILGHSVGILR MRHIIDQVID TPADVLIEGE TGTGKELVAR YLHDHSSRNQ ANFVAINCGA IPENLIESEL FGAEAGAFTG VDKLRVGKFE YANGGTLFLD EIESTPLSLQ VKLLRVLEDR KVERLGSNKS IHLDIRVIAA TKVDLKSLCD TGEFRQDLLY RLNLVTVPIP PLRDRREDIP LLFLHFARMA SARYHKALIA LNAEQNAILS SHDWPGNVRE LRNLAERYVL LGGEAAFAGT LGNAPSLHTS MSLLQRVEFF ERVLIEEALS HNKGSIKQTM EQLELPRKTL YDKMRKYDLD RKQYINADE
|
| |