More than 300 homologs were found in PanDaTox collection
for query gene Mmwyl1_2875 on replicon NC_009654
Organism: Marinomonas sp. MWYL1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009654  Mmwyl1_2875  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
457 aa  941    Marinomonas sp. MWYL1  Bacteria  normal  normal  0.0385307 
 
 
-
 
NC_009456  VC0395_1135  C4-dicarboxylate transport transcriptional regulatory protein  55.18 
 
 
450 aa  481  1e-134  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000815  C4-dicarboxylate transport transcriptional regulatory protein  51.67 
 
 
449 aa  466  9.999999999999999e-131  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06722  acetoacetate metabolism regulatory protein AtoC  50.44 
 
 
449 aa  465  9.999999999999999e-131  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  46.99 
 
 
446 aa  413  1e-114  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  46.21 
 
 
442 aa  407  1.0000000000000001e-112  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_008463  PA14_72720  putative two-component response regulator  44.99 
 
 
447 aa  405  1.0000000000000001e-112  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.269979  normal 
 
 
-
 
NC_010501  PputW619_1042  two component, sigma54 specific, Fis family transcriptional regulator  45.98 
 
 
444 aa  402  1e-111  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  46.34 
 
 
444 aa  403  1e-111  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  46.34 
 
 
444 aa  402  1e-111  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_010322  PputGB1_4410  two component, sigma54 specific, Fis family transcriptional regulator  45.68 
 
 
444 aa  396  1e-109  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_6313  putative two-component response regulator  44.93 
 
 
447 aa  395  1e-109  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  44.99 
 
 
446 aa  397  1e-109  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_007347  Reut_A2669  two component, sigma54 specific, Fis family transcriptional regulator  45.74 
 
 
439 aa  389  1e-107  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0194  two component, sigma54 specific, transcriptional regulator, Fis family  45.62 
 
 
438 aa  390  1e-107  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0392315 
 
 
-
 
NC_003295  RSc0332  C4-dicarboxylate transport response regulator transcription regulator protein  45.39 
 
 
438 aa  386  1e-106  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4292  sigma-54 dependent transcriptional regulator/response regulator  45.01 
 
 
444 aa  385  1e-106  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3995  helix-turn-helix, Fis-type  43.81 
 
 
444 aa  387  1e-106  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0385153 
 
 
-
 
NC_010682  Rpic_0188  two component, sigma54 specific, transcriptional regulator, Fis family  45.39 
 
 
438 aa  388  1e-106  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1516  C4-dicarboxylate transport transcriptional regulatory protein  44.54 
 
 
446 aa  384  1e-105  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0287  two component, sigma-54 specific, Fis family transcriptional regulator  44.03 
 
 
462 aa  384  1e-105  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.378858 
 
 
-
 
NC_009654  Mmwyl1_0915  two component, sigma54 specific, Fis family transcriptional regulator  44.4 
 
 
452 aa  384  1e-105  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0588  Fis family transcriptional regulator  43.83 
 
 
458 aa  383  1e-105  Cupriavidus metallidurans CH34  Bacteria  normal  0.651672  normal 
 
 
-
 
NC_012560  Avin_03680  C4 dicarboxylate two-component response regulator, sigma54-dependent; DctD2  45.92 
 
 
461 aa  382  1e-105  Azotobacter vinelandii DJ  Bacteria  normal  0.0105245  n/a   
 
 
-
 
NC_008463  PA14_68250  two-component response regulator  45.64 
 
 
462 aa  383  1e-105  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.371358  normal  0.144717 
 
 
-
 
NC_010622  Bphy_0227  two component, sigma54 specific, Fis family transcriptional regulator  43.97 
 
 
452 aa  378  1e-104  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0432  two component, sigma54 specific, Fis family transcriptional regulator  44.52 
 
 
450 aa  379  1e-104  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0263  two component, sigma54 specific, transcriptional regulator, Fis family  45.33 
 
 
468 aa  379  1e-104  Pseudomonas putida KT2440  Bacteria  normal  0.513605  normal  0.0177919 
 
 
-
 
NC_009439  Pmen_4294  two component, sigma54 specific, Fis family transcriptional regulator  44.98 
 
 
461 aa  380  1e-104  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.595978 
 
 
-
 
NC_007347  Reut_A0275  helix-turn-helix, Fis-type  44.22 
 
 
441 aa  379  1e-104  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0278  two component, sigma54 specific, Fis family transcriptional regulator  45.56 
 
 
468 aa  382  1e-104  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1442  two component, sigma54 specific, Fis family transcriptional regulator  44.49 
 
 
455 aa  380  1e-104  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  42.98 
 
 
461 aa  381  1e-104  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0230  Fis family transcriptional regulator  44.87 
 
 
444 aa  381  1e-104  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5905  two-component response regulator  45.64 
 
 
462 aa  381  1e-104  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2681  two component, sigma54 specific, Fis family transcriptional regulator  44.07 
 
 
444 aa  379  1e-104  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.818562 
 
 
-
 
NC_008709  Ping_0712  C4-dicarboxylate transport sigma-54 regulatory protein  43.02 
 
 
446 aa  375  1e-103  Psychromonas ingrahamii 37  Bacteria  normal  0.212594  normal 
 
 
-
 
NC_010172  Mext_1258  sigma-54 factor interaction domain-containing protein  44.15 
 
 
451 aa  377  1e-103  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.438925 
 
 
-
 
NC_011757  Mchl_1419  two component, sigma54 specific, transcriptional regulator, Fis family  44.15 
 
 
451 aa  377  1e-103  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.895196 
 
 
-
 
NC_010508  Bcenmc03_2882  two component, sigma54 specific, Fis family transcriptional regulator  43.85 
 
 
450 aa  377  1e-103  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.486122  normal 
 
 
-
 
NC_008060  Bcen_2257  two component, sigma54 specific, Fis family transcriptional regulator  43.85 
 
 
450 aa  376  1e-103  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4293  two component, sigma54 specific, Fis family transcriptional regulator  44.67 
 
 
448 aa  376  1e-103  Delftia acidovorans SPH-1  Bacteria  normal  0.475037  normal 
 
 
-
 
NC_008542  Bcen2424_2871  two component, sigma54 specific, Fis family transcriptional regulator  43.85 
 
 
450 aa  376  1e-103  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0598017  n/a   
 
 
-
 
NC_010551  BamMC406_2788  two component, sigma54 specific, Fis family transcriptional regulator  43.85 
 
 
451 aa  375  1e-102  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2148  helix-turn-helix, Fis-type  44.07 
 
 
442 aa  373  1e-102  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.383237 
 
 
-
 
NC_012850  Rleg_3460  two component, sigma54 specific, transcriptional regulator, Fis family  42.63 
 
 
444 aa  374  1e-102  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0376131  normal 
 
 
-
 
NC_008700  Sama_2213  response regulator receiver protein  43.74 
 
 
461 aa  373  1e-102  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0520  two component, sigma54 specific, transcriptional regulator, Fis family  43.46 
 
 
450 aa  373  1e-102  Burkholderia phytofirmans PsJN  Bacteria  normal  0.150741  normal 
 
 
-
 
NC_011369  Rleg2_3169  two component, sigma54 specific, transcriptional regulator, Fis family  43.08 
 
 
444 aa  375  1e-102  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.254755  normal  0.187976 
 
 
-
 
NC_008390  Bamb_2926  two component, sigma54 specific, Fis family transcriptional regulator  43.85 
 
 
451 aa  375  1e-102  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0288  two component, sigma54 specific, Fis family transcriptional regulator  44.67 
 
 
468 aa  371  1e-101  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4938  helix-turn-helix, Fis-type  43.67 
 
 
463 aa  371  1e-101  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_5345  two component, sigma54 specific, transcriptional regulator, Fis family  43.71 
 
 
455 aa  372  1e-101  Variovorax paradoxus S110  Bacteria  normal  0.464024  n/a   
 
 
-
 
NC_007951  Bxe_A4195  two component, sigma-54 specific, Fis family transcriptional regulator  43.46 
 
 
450 aa  369  1e-101  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.314648 
 
 
-
 
NC_010501  PputW619_4947  two component, sigma54 specific, Fis family transcriptional regulator  44.57 
 
 
469 aa  369  1e-101  Pseudomonas putida W619  Bacteria  normal  0.669147  hitchhiker  0.0000241398 
 
 
-
 
NC_009076  BURPS1106A_0478  C4-dicarboxylate transport transcriptional response regulator DctD  43.18 
 
 
451 aa  367  1e-100  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5399  sigma-54 dependent transcriptional regulator/response regulator  44.27 
 
 
461 aa  368  1e-100  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA3226  C4-dicarboxylate transport transcriptional regulatory protein  43.18 
 
 
451 aa  367  1e-100  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0642  C4-dicarboxylate transport transcriptional regulatory protein  43.18 
 
 
451 aa  367  1e-100  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4048  two component, sigma54 specific, Fis family transcriptional regulator  43.65 
 
 
459 aa  365  1e-100  Xanthobacter autotrophicus Py2  Bacteria  normal  0.650008  normal  0.353812 
 
 
-
 
NC_007510  Bcep18194_A6213  two component, sigma54 specific, Fis family transcriptional regulator  42.95 
 
 
451 aa  367  1e-100  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A0201  C4-dicarboxylate transport transcriptional regulatory protein  43.18 
 
 
451 aa  367  1e-100  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5669  two component, sigma54 specific, Fis family transcriptional regulator  44.09 
 
 
454 aa  367  1e-100  Burkholderia phymatum STM815  Bacteria  normal  0.946519  normal 
 
 
-
 
NC_007651  BTH_I0401  C4-dicarboxylate transport transcriptional regulatory protein  42.95 
 
 
451 aa  367  1e-100  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2818  C4-dicarboxylate transport transcriptional regulatory protein  43.18 
 
 
451 aa  367  1e-100  Burkholderia mallei NCTC 10247  Bacteria  normal  0.896177  n/a   
 
 
-
 
NC_010506  Swoo_1722  two component, sigma54 specific, Fis family transcriptional regulator  43.08 
 
 
455 aa  367  1e-100  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0267167 
 
 
-
 
NC_009074  BURPS668_0458  C4-dicarboxylate transport transcriptional response regulator DctD  43.18 
 
 
451 aa  367  1e-100  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1392  C4-dicarboxylate transport transcriptional regulatory protein  43.18 
 
 
451 aa  367  1e-100  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3936  two component, sigma54 specific, Fis family transcriptional regulator  43.54 
 
 
441 aa  365  1e-99  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2013  C4-dicarboxylate transport transcriptional regulatory protein  42.86 
 
 
453 aa  364  2e-99  Colwellia psychrerythraea 34H  Bacteria  normal  0.618445  n/a   
 
 
-
 
NC_007298  Daro_0477  two component, sigma54 specific, Fis family transcriptional regulator  45.09 
 
 
443 aa  363  2e-99  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4346  two component, sigma54 specific, Fis family transcriptional regulator  43.75 
 
 
442 aa  364  2e-99  Pseudomonas putida GB-1  Bacteria  normal  0.788839  normal 
 
 
-
 
NC_010725  Mpop_1208  two component, sigma54 specific, transcriptional regulator, Fis family  43.27 
 
 
458 aa  364  2e-99  Methylobacterium populi BJ001  Bacteria  normal  0.320827  normal  0.373488 
 
 
-
 
NC_010524  Lcho_4338  two component, sigma54 specific, Fis family transcriptional regulator  41.43 
 
 
456 aa  363  3e-99  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010501  PputW619_1095  two component, sigma54 specific, Fis family transcriptional regulator  43.3 
 
 
442 aa  363  4e-99  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1107  two component, sigma54 specific, Fis family transcriptional regulator  43.85 
 
 
442 aa  363  4e-99  Pseudomonas putida F1  Bacteria  normal  normal  0.248973 
 
 
-
 
NC_008391  Bamb_4692  two component, sigma54 specific, Fis family transcriptional regulator  42.76 
 
 
453 aa  363  4e-99  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0995721 
 
 
-
 
NC_013456  VEA_004047  C4-dicarboxylate transport transcriptional regulatory protein  42.44 
 
 
445 aa  363  5.0000000000000005e-99  Vibrio sp. Ex25  Bacteria  normal  0.114732  n/a   
 
 
-
 
NC_002947  PP_1066  two component, sigma54 specific, transcriptional regulator, Fis family  43.85 
 
 
442 aa  362  6e-99  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2719  two component, sigma54 specific, transcriptional regulator, Fis family protein  42.23 
 
 
457 aa  362  8e-99  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1196  two component, sigma54 specific, transcriptional regulator  42.28 
 
 
448 aa  361  1e-98  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.588017 
 
 
-
 
NC_007511  Bcep18194_B0306  two component, sigma54 specific, Fis family transcriptional regulator  42.66 
 
 
453 aa  361  2e-98  Burkholderia sp. 383  Bacteria  normal  0.794109  normal 
 
 
-
 
NC_010515  Bcenmc03_4926  two component, sigma54 specific, Fis family transcriptional regulator  43.21 
 
 
453 aa  361  2e-98  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3453  two component, sigma54 specific, Fis family transcriptional regulator  42.15 
 
 
445 aa  360  2e-98  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3024  two component, sigma54 specific, Fis family transcriptional regulator  43.21 
 
 
453 aa  361  2e-98  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5342  two component, sigma54 specific, Fis family transcriptional regulator  43.21 
 
 
453 aa  361  2e-98  Burkholderia cenocepacia HI2424  Bacteria  normal  0.71249  normal  0.508922 
 
 
-
 
NC_009620  Smed_4176  two component, sigma54 specific, Fis family transcriptional regulator  41.87 
 
 
452 aa  360  3e-98  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.280959 
 
 
-
 
NC_010086  Bmul_3388  two component, sigma54 specific, Fis family transcriptional regulator  42.73 
 
 
453 aa  360  3e-98  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A1573  C4-dicarboxylate transport transcriptional response regulator  41.94 
 
 
472 aa  360  4e-98  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.000200154  n/a   
 
 
-
 
NC_006349  BMAA0071  C4-dicarboxylate transport transcriptional regulatory protein  41.94 
 
 
447 aa  359  5e-98  Burkholderia mallei ATCC 23344  Bacteria  decreased coverage  0.00283689  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0083  C4-dicarboxylate transport transcriptional regulatory protein  41.94 
 
 
448 aa  359  5e-98  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1511  C4-dicarboxylate transport transcriptional regulatory protein  41.94 
 
 
448 aa  359  5e-98  Burkholderia mallei NCTC 10229  Bacteria  normal  0.19671  n/a   
 
 
-
 
NC_009079  BMA10247_A0086  C4-dicarboxylate transport transcriptional regulatory protein  41.94 
 
 
448 aa  359  5e-98  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1231  C4-dicarboxylate transport transcriptional regulatory protein  41.94 
 
 
448 aa  359  5e-98  Burkholderia mallei SAVP1  Bacteria  normal  0.310276  n/a   
 
 
-
 
NC_010552  BamMC406_5221  two component, sigma54 specific, Fis family transcriptional regulator  42.99 
 
 
453 aa  358  9e-98  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A0103  C4-dicarboxylate transport transcriptional response regulator  41.94 
 
 
447 aa  358  9.999999999999999e-98  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.00799135  n/a   
 
 
-
 
NC_009831  Ssed_2912  two component, sigma54 specific, Fis family transcriptional regulator  42.21 
 
 
455 aa  358  9.999999999999999e-98  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2504  two component, sigma54 specific, Fis family transcriptional regulator  42.74 
 
 
459 aa  358  1.9999999999999998e-97  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4770  two component, sigma54 specific, Fis family transcriptional regulator  42.28 
 
 
446 aa  356  5e-97  Methylobacterium sp. 4-46  Bacteria  normal  0.133057  normal  0.593625 
 
 
-
 
NC_003296  RSp0009  response regulator of the C4-dicarboxylate transport two-component regulatory system transcription regulator protein  42.07 
 
 
454 aa  355  5.999999999999999e-97  Ralstonia solanacearum GMI1000  Bacteria  normal  0.313287  normal 
 
 
-
 
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