| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1135 |
|---|
| Symbol | dctD-2 |
|---|
| ID | 5134327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 1102065 |
|---|
| End bp | 1103417 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640531457 |
|---|
| Product | C4-dicarboxylate transport transcriptional regulatory protein |
|---|
| Protein accession | YP_001215971 |
|---|
| Protein GI | 147671570 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAAAGCC AACGGATTGC ATTGATTGAG GACGACGACA TTGTGCGTCA AGCCACTGGC
CAGTGGTTAC AACTGGCGGG TTTTGACGTG GCGATGTTTG CTGATGGCGC ATCCGCGTTA
GCGGCGATTG AGCAGCAGAG TTTCGCCGCC GTGGTGAGTG ATGTACGCCT GCCCGATACC
GATGGATTGA GTCTGTTGGT GGCGTTGAAA AATGTGCAAT CGCTGATGCC AGTGATTTTG
ATCACTGGGC ATGGCGATGT CGACATGGCG GTGAAAGCAC TGCATCAAGG CGCGTTCGAT
TTTATCGAGA AGCCATTCCA ACCGGAGCGC CTTGCCAACA CCGTGGCGCA AGCGGTCAGT
CAGTACCAAA ACGCGCTGTC ATCGCAGTCG CGTGCCCACT ATCTTGCCTC TGCCAAAGGG
TTAGAGCAGA TCTTGATTGG GCAGTGTAAG TCGATTCAAC TGCTGCGCGA GCAAATCGCC
AAAGTCGCAG CGATGGATAC CAACGTGATC ATTTACGGCG AAACTGGCTG TGGCAAAGAA
CTGGTGGCGC AGTGTCTGCA TCAAGCCAGC GAGCGTCAGC GTGGTCAGTT TGTGGCGATC
AACTGTGGCG CGATCCCAGA AAATCTGTTT GAAAGTGAAC TGTTCGGCCA TGAAGCGGGC
GCGTTTACCG GTGCGGTGAA GCGGAGGATT GGCAAGCTGG AACTGGCCGA TAAAGGCACG
CTGTTTCTGG ATGAAATCGA GAGCATGCCG CTGGCCATGC AAGTGAAAGT GCTCCGCGTG
CTGCAAGATC ATGTGGTAGA GCGGGTGGGC AGTAATCAGC CGATCACCAT TGATCTGCGG
GTCATCGCGG CAGCCAAGGA AGAGCTGCGT CAACACGCGG AATTTCGCCA AGATCTCTTT
TACCGCCTTA ATGTCGCGCA GCTCTATTTA CCGCCGCTGC GTGAGCGAGG CGACGATATT
TTGCTGCTGT TTGAACACTT CTGTGTACAA GTGAAACCGA CTTGGCGCAG CCTGAGTGAA
GCGGATCGGT TGGCGCTGCT TACTTATCGC TGGCCGGGCA ACGTGCGCGA GCTGCGCAAT
GTCGCGCTGC GTTATGCGCT GGATGACAGC ATCAGTGTTG GGGAAATTCT GGCTTCATGT
CCGGGAATGA CTGAAGAAGA AGCTTCAGCA GGGTTACCGC TGGCGATTCA AGTGCACAAC
TTTGAACGTA AAGTGATCGC TCAGGCGCTG CATCGCCATC AAGGTAACAT CAGTGAAGTG
ATGAAAGAGC TGGATTTGCC AAGGCGCACC CTAAATCAGA AAATGCAGAA GTTTGGTTTG
CTTCGCGGTG ATTTTACTGC GCAGGAGGAA TGA
|
|---|
| Protein sequence | MESQRIALIE DDDIVRQATG QWLQLAGFDV AMFADGASAL AAIEQQSFAA VVSDVRLPDT
DGLSLLVALK NVQSLMPVIL ITGHGDVDMA VKALHQGAFD FIEKPFQPER LANTVAQAVS
QYQNALSSQS RAHYLASAKG LEQILIGQCK SIQLLREQIA KVAAMDTNVI IYGETGCGKE
LVAQCLHQAS ERQRGQFVAI NCGAIPENLF ESELFGHEAG AFTGAVKRRI GKLELADKGT
LFLDEIESMP LAMQVKVLRV LQDHVVERVG SNQPITIDLR VIAAAKEELR QHAEFRQDLF
YRLNVAQLYL PPLRERGDDI LLLFEHFCVQ VKPTWRSLSE ADRLALLTYR WPGNVRELRN
VALRYALDDS ISVGEILASC PGMTEEEASA GLPLAIQVHN FERKVIAQAL HRHQGNISEV
MKELDLPRRT LNQKMQKFGL LRGDFTAQEE
|
|---|
| |