Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1196 |
Symbol | dctD |
ID | 5711964 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1235704 |
End bp | 1237050 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641267107 |
Product | two component, sigma54 specific, transcriptional regulator |
Protein accession | YP_001532539 |
Protein GI | 159043745 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.588017 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCAG CGCCCGAGAC CATTCTCTTT GTCGATGACG AGGAGCCCCT GCGCCACGCG GCGGCGCAAA CCCTGCAACT GGCGGAATTC GACGTCGCGT GTTTTGCCGA GGCCGAGGCC GCCCTGCCCC GGATCGCCCG CGATTTCCCC GGCATTCTGG TCACCGACAT CCGCATGCCC GGCATGGACG GCACGACGCT GATGGCCCGC GCGCTGGAGA TCGACCCGGA GTTTCCGGTG ATCCTCGTGA CCGGCCACGG CGACGTGGAC CTGGCGGTGC AGTCCATGCG CGACGGGGCC TATGATTTTC TGGAAAAACC CTACGCACCC AGCCGTCTGG TCGCCAGCGT GCGCCGGGCG CTCGACAAGC GCCGCCTGAC CCTCGACAAC CGCCAGCTGC GCGCCGCCAT GGGCCGCCGC GACCCGGTGG AGGCCCGGCT CACCGGGCGC AGCGCGGTGA TGGTCGCCCT ACGTCAGCAG CTGCGCGCGG TGGCGGGCAC GGATGCGGAT GTGCTGATCG TGGGGGACAC GGGCACGGGC AAGGAGGTCG CGGCCCGCGC GCTCCACCGC GCCAGCACCC GCAGTACGGG GCCTTTCCAG CATATCAACT GCGCCGCCCT GCCCGCCGAC CTGATCGAGA GCGAGCTTTT TGGGCATGAG GCCGGCGCCT ATCCCGGGGC GATGCGCGCG CGGTTCGGCA AGTTCGAGGC CGCGCGGGGC GGGACGGTGT TCCTGGATGA GATCGACAGT TTGCCCCTGC CGCTCCAGGC CAAGCTGCTG CACGCGATCC AGAACCGGAC GGTGACGCGG CTCGGCTCGA ACGATCCGGT GCATCTCGAC ATCCGCTTCG TCGCCGCCAG CAAGAAGGAC CTCGAAGCCG AGGCCGCCGC GGAGCGATTT CGGGCCGACC TGCTCTACCG GCTGAACGTG GTGACGGTGG GGCTGCCACC GCTGGCGGAG CGGCGGGAGG ATATTCCGCT GCTGTTCGCG CAGCTCGCGA CCGAGGCCGC GGCGCGCTAC AAGCAGCCCG CGCCGGAGAT CTCGGGCGCG ATCCTGACCG CGCTCGCGGC CCGCGACTGG CCCGGCAACG TGCGCGAGCT GCGCAATGCC GCCGACCGCT ACGTACTGGG GCTGGATCTT GCGCTGACCA ACACCGCCGA AGGCGCGTCC ATGGGGTTGG CCGAGCGGAT GGCGGCCCAT GAGAAGGCGC TGATCGCCGC GAGCCTCGCA GCCCATGGCG GGCGGCTCAA GGATACCTAC GCGGCGCTCA ACCTTTCGCG CAAGGCGCTC TACGAGAAGA TGCAGAAGCA CGGGCTGTCC CGAGACACCT TCGCCGAGGA AGACTGA
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Protein sequence | MSAAPETILF VDDEEPLRHA AAQTLQLAEF DVACFAEAEA ALPRIARDFP GILVTDIRMP GMDGTTLMAR ALEIDPEFPV ILVTGHGDVD LAVQSMRDGA YDFLEKPYAP SRLVASVRRA LDKRRLTLDN RQLRAAMGRR DPVEARLTGR SAVMVALRQQ LRAVAGTDAD VLIVGDTGTG KEVAARALHR ASTRSTGPFQ HINCAALPAD LIESELFGHE AGAYPGAMRA RFGKFEAARG GTVFLDEIDS LPLPLQAKLL HAIQNRTVTR LGSNDPVHLD IRFVAASKKD LEAEAAAERF RADLLYRLNV VTVGLPPLAE RREDIPLLFA QLATEAAARY KQPAPEISGA ILTALAARDW PGNVRELRNA ADRYVLGLDL ALTNTAEGAS MGLAERMAAH EKALIAASLA AHGGRLKDTY AALNLSRKAL YEKMQKHGLS RDTFAEED
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