Gene Dshi_1196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1196 
SymboldctD 
ID5711964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1235704 
End bp1237050 
Gene Length1347 bp 
Protein Length448 aa 
Translation table11 
GC content70% 
IMG OID641267107 
Producttwo component, sigma54 specific, transcriptional regulator 
Protein accessionYP_001532539 
Protein GI159043745 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.588017 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCAG CGCCCGAGAC CATTCTCTTT GTCGATGACG AGGAGCCCCT GCGCCACGCG 
GCGGCGCAAA CCCTGCAACT GGCGGAATTC GACGTCGCGT GTTTTGCCGA GGCCGAGGCC
GCCCTGCCCC GGATCGCCCG CGATTTCCCC GGCATTCTGG TCACCGACAT CCGCATGCCC
GGCATGGACG GCACGACGCT GATGGCCCGC GCGCTGGAGA TCGACCCGGA GTTTCCGGTG
ATCCTCGTGA CCGGCCACGG CGACGTGGAC CTGGCGGTGC AGTCCATGCG CGACGGGGCC
TATGATTTTC TGGAAAAACC CTACGCACCC AGCCGTCTGG TCGCCAGCGT GCGCCGGGCG
CTCGACAAGC GCCGCCTGAC CCTCGACAAC CGCCAGCTGC GCGCCGCCAT GGGCCGCCGC
GACCCGGTGG AGGCCCGGCT CACCGGGCGC AGCGCGGTGA TGGTCGCCCT ACGTCAGCAG
CTGCGCGCGG TGGCGGGCAC GGATGCGGAT GTGCTGATCG TGGGGGACAC GGGCACGGGC
AAGGAGGTCG CGGCCCGCGC GCTCCACCGC GCCAGCACCC GCAGTACGGG GCCTTTCCAG
CATATCAACT GCGCCGCCCT GCCCGCCGAC CTGATCGAGA GCGAGCTTTT TGGGCATGAG
GCCGGCGCCT ATCCCGGGGC GATGCGCGCG CGGTTCGGCA AGTTCGAGGC CGCGCGGGGC
GGGACGGTGT TCCTGGATGA GATCGACAGT TTGCCCCTGC CGCTCCAGGC CAAGCTGCTG
CACGCGATCC AGAACCGGAC GGTGACGCGG CTCGGCTCGA ACGATCCGGT GCATCTCGAC
ATCCGCTTCG TCGCCGCCAG CAAGAAGGAC CTCGAAGCCG AGGCCGCCGC GGAGCGATTT
CGGGCCGACC TGCTCTACCG GCTGAACGTG GTGACGGTGG GGCTGCCACC GCTGGCGGAG
CGGCGGGAGG ATATTCCGCT GCTGTTCGCG CAGCTCGCGA CCGAGGCCGC GGCGCGCTAC
AAGCAGCCCG CGCCGGAGAT CTCGGGCGCG ATCCTGACCG CGCTCGCGGC CCGCGACTGG
CCCGGCAACG TGCGCGAGCT GCGCAATGCC GCCGACCGCT ACGTACTGGG GCTGGATCTT
GCGCTGACCA ACACCGCCGA AGGCGCGTCC ATGGGGTTGG CCGAGCGGAT GGCGGCCCAT
GAGAAGGCGC TGATCGCCGC GAGCCTCGCA GCCCATGGCG GGCGGCTCAA GGATACCTAC
GCGGCGCTCA ACCTTTCGCG CAAGGCGCTC TACGAGAAGA TGCAGAAGCA CGGGCTGTCC
CGAGACACCT TCGCCGAGGA AGACTGA
 
Protein sequence
MSAAPETILF VDDEEPLRHA AAQTLQLAEF DVACFAEAEA ALPRIARDFP GILVTDIRMP 
GMDGTTLMAR ALEIDPEFPV ILVTGHGDVD LAVQSMRDGA YDFLEKPYAP SRLVASVRRA
LDKRRLTLDN RQLRAAMGRR DPVEARLTGR SAVMVALRQQ LRAVAGTDAD VLIVGDTGTG
KEVAARALHR ASTRSTGPFQ HINCAALPAD LIESELFGHE AGAYPGAMRA RFGKFEAARG
GTVFLDEIDS LPLPLQAKLL HAIQNRTVTR LGSNDPVHLD IRFVAASKKD LEAEAAAERF
RADLLYRLNV VTVGLPPLAE RREDIPLLFA QLATEAAARY KQPAPEISGA ILTALAARDW
PGNVRELRNA ADRYVLGLDL ALTNTAEGAS MGLAERMAAH EKALIAASLA AHGGRLKDTY
AALNLSRKAL YEKMQKHGLS RDTFAEED