More than 300 homologs were found in PanDaTox collection
for query gene Tgr7_0642 on replicon NC_011901
Organism: Thioalkalivibrio sp. HL-EbGR7



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011901  Tgr7_0642  putative transcriptional regulator, Crp/Fnr family  100 
 
 
231 aa  463  9.999999999999999e-131  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  36.31 
 
 
228 aa  93.2  3e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  32.07 
 
 
229 aa  85.9  5e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  32.28 
 
 
229 aa  85.5  6e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  30.73 
 
 
229 aa  82.4  0.000000000000006  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  34.68 
 
 
254 aa  80.9  0.00000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  31.32 
 
 
248 aa  81.3  0.00000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  29.89 
 
 
241 aa  79.3  0.00000000000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  30.22 
 
 
229 aa  79  0.00000000000006  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  30 
 
 
243 aa  78.2  0.0000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_007413  Ava_3340  Crp/FNR family transcriptional regulator  28.05 
 
 
207 aa  77.8  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0648445 
 
 
-
 
NC_011884  Cyan7425_0755  transcriptional regulator, Crp/Fnr family  27.23 
 
 
223 aa  77.8  0.0000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.125698 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  33.73 
 
 
228 aa  77.8  0.0000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  24.61 
 
 
225 aa  76.3  0.0000000000004  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009955  Dshi_3764  cyclic nucleotide-binding protein  34.12 
 
 
188 aa  75.5  0.0000000000007  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.116438  normal  0.259153 
 
 
-
 
NC_009957  Dshi_4040  cyclic nucleotide-binding protein  34.12 
 
 
188 aa  75.5  0.0000000000007  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.417397  n/a   
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  33.88 
 
 
240 aa  75.1  0.0000000000008  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_013161  Cyan8802_2082  transcriptional regulator, Crp/Fnr family  26.7 
 
 
225 aa  74.7  0.000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2058  transcriptional regulator, Crp/Fnr family  26.7 
 
 
225 aa  74.7  0.000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  28.8 
 
 
230 aa  74.7  0.000000000001  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_011729  PCC7424_0372  transcriptional regulator, Crp/Fnr family  26.7 
 
 
225 aa  74.3  0.000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  27.6 
 
 
232 aa  73.9  0.000000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  32.02 
 
 
238 aa  73.6  0.000000000003  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  31.61 
 
 
227 aa  73.2  0.000000000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  31.61 
 
 
227 aa  73.2  0.000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  25.64 
 
 
219 aa  72  0.000000000007  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_007413  Ava_3283  Crp/FNR family transcriptional regulator  25.36 
 
 
223 aa  70.9  0.00000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  30 
 
 
241 aa  71.2  0.00000000001  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  29.08 
 
 
229 aa  70.9  0.00000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  29.08 
 
 
246 aa  70.9  0.00000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  27.08 
 
 
231 aa  69.7  0.00000000003  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  27.08 
 
 
231 aa  69.7  0.00000000003  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  28.11 
 
 
227 aa  68.9  0.00000000005  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  32.97 
 
 
227 aa  68.9  0.00000000006  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  28.89 
 
 
231 aa  68.9  0.00000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_011729  PCC7424_3735  transcriptional regulator, Crp/Fnr family  28.25 
 
 
210 aa  68.9  0.00000000007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011126  HY04AAS1_0349  transcriptional regulator, Crp/Fnr family  24.29 
 
 
219 aa  68.6  0.00000000008  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.000181532  n/a   
 
 
-
 
NC_008312  Tery_2023  Crp/FNR family transcriptional regulator  24.76 
 
 
221 aa  68.6  0.00000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0496812 
 
 
-
 
NC_007604  Synpcc7942_0127  Crp/FNR family transcriptional regulator  28.74 
 
 
222 aa  68.6  0.00000000009  Synechococcus elongatus PCC 7942  Bacteria  normal  0.867755  normal  0.325855 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  29.47 
 
 
226 aa  68.2  0.0000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  26.8 
 
 
225 aa  68.2  0.0000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  28.42 
 
 
226 aa  67.8  0.0000000001  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008789  Hhal_0917  CRP/FNR family transcriptional regulator  31.35 
 
 
254 aa  68.2  0.0000000001  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  31.89 
 
 
227 aa  68.2  0.0000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  26.84 
 
 
272 aa  67.8  0.0000000001  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  31.55 
 
 
222 aa  67.4  0.0000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_014248  Aazo_1065  Crp/Fnr family transcriptional regulator  24.88 
 
 
223 aa  67  0.0000000002  'Nostoc azollae' 0708  Bacteria  normal  0.547512  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  31.55 
 
 
222 aa  67.4  0.0000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  26.04 
 
 
232 aa  66.6  0.0000000003  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  26.18 
 
 
231 aa  66.6  0.0000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_010524  Lcho_4099  Crp/FNR family transcriptional regulator  27.89 
 
 
237 aa  66.6  0.0000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000655046 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  24.06 
 
 
226 aa  66.2  0.0000000004  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2709  transcriptional activator FtrB  28.49 
 
 
232 aa  65.9  0.0000000005  Maricaulis maris MCS10  Bacteria  normal  normal  0.0829617 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  26.37 
 
 
232 aa  65.9  0.0000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  26.96 
 
 
231 aa  65.5  0.0000000006  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  27.87 
 
 
225 aa  65.5  0.0000000007  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  29.41 
 
 
232 aa  65.5  0.0000000008  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  28.41 
 
 
224 aa  64.7  0.000000001  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  28.26 
 
 
249 aa  64.7  0.000000001  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  28.95 
 
 
243 aa  63.9  0.000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  24.17 
 
 
240 aa  63.9  0.000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_0436  transcription regulator  21.51 
 
 
214 aa  63.5  0.000000003  Campylobacter curvus 525.92  Bacteria  normal  0.0316636  n/a   
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  22.03 
 
 
201 aa  63.5  0.000000003  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  24.39 
 
 
227 aa  62.8  0.000000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_007519  Dde_0463  Crp/FNR family transcriptional regulator  25.57 
 
 
221 aa  63.2  0.000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.607183  n/a   
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  26.11 
 
 
227 aa  62.8  0.000000004  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  29.53 
 
 
237 aa  62.8  0.000000004  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_013512  Sdel_0691  cyclic nucleotide-binding protein  25.99 
 
 
212 aa  63.2  0.000000004  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1550  protein YieJ  20.43 
 
 
212 aa  62.4  0.000000005  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  27.68 
 
 
239 aa  62  0.000000007  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  25.91 
 
 
226 aa  60.8  0.00000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  27.84 
 
 
233 aa  61.6  0.00000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  27.84 
 
 
233 aa  61.6  0.00000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  25 
 
 
234 aa  61.6  0.00000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  29.48 
 
 
225 aa  60.8  0.00000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  22.03 
 
 
223 aa  60.5  0.00000002  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_011830  Dhaf_3071  transcriptional regulator, Crp/Fnr family  27.78 
 
 
224 aa  60.8  0.00000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00222127  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  24.61 
 
 
225 aa  60.8  0.00000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  27.23 
 
 
251 aa  60.8  0.00000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  28.5 
 
 
227 aa  60.8  0.00000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2132  transcriptional regulator, Crp/Fnr family  29.45 
 
 
293 aa  60.8  0.00000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.263338  n/a   
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  24.21 
 
 
222 aa  60.8  0.00000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  31.79 
 
 
239 aa  60.1  0.00000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  28.02 
 
 
222 aa  60.1  0.00000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  27.32 
 
 
233 aa  60.1  0.00000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  26.18 
 
 
234 aa  60.1  0.00000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  25.91 
 
 
236 aa  60.1  0.00000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  29.48 
 
 
225 aa  60.1  0.00000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  28.57 
 
 
224 aa  60.1  0.00000003  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_2357  transcriptional regulator, Crp/Fnr family  26.78 
 
 
212 aa  59.7  0.00000003  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  27.23 
 
 
233 aa  59.7  0.00000004  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  25.13 
 
 
236 aa  59.3  0.00000005  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  26.09 
 
 
254 aa  59.3  0.00000005  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  26.67 
 
 
220 aa  59.3  0.00000005  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  27.04 
 
 
239 aa  58.9  0.00000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_0528  transcriptional regulator, Crp/Fnr family  28.09 
 
 
244 aa  57.8  0.0000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2762  transcriptional regulator, Crp/Fnr family  25.13 
 
 
234 aa  57.8  0.0000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  24.48 
 
 
219 aa  57.8  0.0000001  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_008148  Rxyl_1234  Crp/FNR family transcriptional regulator  30.29 
 
 
232 aa  57.8  0.0000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  26.96 
 
 
254 aa  57.8  0.0000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
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