More than 300 homologs were found in PanDaTox collection
for query gene Sked_25020 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_25020  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  100 
 
 
219 aa  415  9.999999999999999e-116  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2414  two component transcriptional regulator, LuxR family  53.59 
 
 
215 aa  189  2.9999999999999997e-47  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2672  two component transcriptional regulator, LuxR family  48.79 
 
 
219 aa  171  6.999999999999999e-42  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.240505 
 
 
-
 
NC_013131  Caci_7658  two component transcriptional regulator, LuxR family  48.31 
 
 
219 aa  164  8e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0601  two component transcriptional regulator, LuxR family  45.75 
 
 
215 aa  153  2e-36  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  44.71 
 
 
230 aa  151  8.999999999999999e-36  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  44.44 
 
 
226 aa  149  4e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_013947  Snas_5262  two component transcriptional regulator, LuxR family  43.75 
 
 
219 aa  148  5e-35  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3324  two component transcriptional regulator, LuxR family  45.63 
 
 
219 aa  147  1.0000000000000001e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0107044  normal  0.345616 
 
 
-
 
NC_013595  Sros_7211  response regulator receiver protein  45.63 
 
 
215 aa  145  5e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0769384 
 
 
-
 
NC_014210  Ndas_4417  two component transcriptional regulator, LuxR family  44.93 
 
 
232 aa  142  3e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2233  LuxR response regulator receiver  46.41 
 
 
228 aa  142  4e-33  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_32780  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  43.81 
 
 
216 aa  142  5e-33  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4672  response regulator receiver protein  42.65 
 
 
212 aa  141  9e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.223352  normal  0.339353 
 
 
-
 
NC_013595  Sros_2445  response regulator receiver protein  43 
 
 
218 aa  140  9.999999999999999e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0115114  normal  0.02149 
 
 
-
 
NC_013947  Snas_1960  two component transcriptional regulator, LuxR family  44.98 
 
 
216 aa  139  1.9999999999999998e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0782  two component transcriptional regulator, LuxR family  43.96 
 
 
220 aa  140  1.9999999999999998e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  43.48 
 
 
214 aa  139  3e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8799  response regulator receiver protein  44.5 
 
 
227 aa  139  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.755207  normal 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  44.88 
 
 
225 aa  138  6e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_014210  Ndas_4857  two component transcriptional regulator, LuxR family  44.44 
 
 
234 aa  137  1e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.243741 
 
 
-
 
NC_013595  Sros_3998  response regulator receiver protein  43.2 
 
 
233 aa  137  1e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.363745  normal  0.263649 
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  40.19 
 
 
222 aa  137  1e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  44.17 
 
 
215 aa  137  1e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  40.58 
 
 
218 aa  136  2e-31  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013441  Gbro_2730  response regulator receiver  40.87 
 
 
216 aa  135  3.0000000000000003e-31  Gordonia bronchialis DSM 43247  Bacteria  normal  0.776601  n/a   
 
 
-
 
NC_007333  Tfu_1845  LuxR response regulator receiver  42.72 
 
 
215 aa  135  4e-31  Thermobifida fusca YX  Bacteria  hitchhiker  0.00433344  n/a   
 
 
-
 
NC_013947  Snas_1883  two component transcriptional regulator, LuxR family  43.41 
 
 
215 aa  135  4e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0780809 
 
 
-
 
NC_013595  Sros_6161  response regulator receiver protein  44.17 
 
 
221 aa  135  4e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.902987  decreased coverage  0.000109123 
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  43.75 
 
 
220 aa  135  5e-31  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  39.91 
 
 
230 aa  135  6.0000000000000005e-31  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  42.03 
 
 
225 aa  134  8e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  41.06 
 
 
225 aa  134  9e-31  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  44.08 
 
 
227 aa  134  9.999999999999999e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  41.58 
 
 
213 aa  134  9.999999999999999e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2780  two component transcriptional regulator, LuxR family  42.18 
 
 
219 aa  133  1.9999999999999998e-30  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.855193  normal  0.402473 
 
 
-
 
NC_013521  Sked_25620  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.18 
 
 
219 aa  133  1.9999999999999998e-30  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.263807 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  41.28 
 
 
220 aa  133  1.9999999999999998e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  41.1 
 
 
234 aa  133  1.9999999999999998e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  42.11 
 
 
220 aa  133  3e-30  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  40.28 
 
 
231 aa  133  3e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  41.67 
 
 
218 aa  132  5e-30  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013093  Amir_3314  two component transcriptional regulator, LuxR family  44.08 
 
 
222 aa  132  5e-30  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00833126  n/a   
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  41.51 
 
 
225 aa  132  6e-30  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  37.68 
 
 
220 aa  131  6.999999999999999e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_013595  Sros_0508  response regulator receiver protein  43 
 
 
212 aa  130  1.0000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0065  two component transcriptional regulator, LuxR family  42.51 
 
 
204 aa  130  1.0000000000000001e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2449  two component transcriptional regulator, LuxR family  41.83 
 
 
220 aa  130  2.0000000000000002e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_013739  Cwoe_5656  two component transcriptional regulator, LuxR family  41.83 
 
 
222 aa  130  2.0000000000000002e-29  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0366  two component transcriptional regulator, LuxR family  43 
 
 
220 aa  129  2.0000000000000002e-29  Conexibacter woesei DSM 14684  Bacteria  normal  0.0587069  normal  0.203995 
 
 
-
 
NC_013595  Sros_3669  response regulator receiver protein  43.69 
 
 
213 aa  130  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  41.55 
 
 
239 aa  129  3e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  41.89 
 
 
239 aa  129  4.0000000000000003e-29  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  43 
 
 
239 aa  129  4.0000000000000003e-29  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  40.28 
 
 
221 aa  129  5.0000000000000004e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_014158  Tpau_0647  two component transcriptional regulator, LuxR family  37.38 
 
 
212 aa  128  7.000000000000001e-29  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.518884  n/a   
 
 
-
 
NC_013093  Amir_5893  two component transcriptional regulator, LuxR family  41.06 
 
 
218 aa  127  1.0000000000000001e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3714  two component transcriptional regulator, LuxR family  42.03 
 
 
225 aa  127  1.0000000000000001e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.176655 
 
 
-
 
NC_012669  Bcav_0404  two component transcriptional regulator, LuxR family  40.37 
 
 
218 aa  127  1.0000000000000001e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0987348  normal 
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  41.09 
 
 
212 aa  127  1.0000000000000001e-28  Opitutus terrae PB90-1  Bacteria  normal  normal  0.996792 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  39.34 
 
 
229 aa  127  1.0000000000000001e-28  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013093  Amir_3696  two component transcriptional regulator, LuxR family  45.19 
 
 
217 aa  127  2.0000000000000002e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_19740  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.51 
 
 
216 aa  127  2.0000000000000002e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.682926  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  42.72 
 
 
215 aa  126  3e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  40 
 
 
224 aa  126  3e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_2233  two component transcriptional regulator, LuxR family  42.86 
 
 
232 aa  125  3e-28  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00197033  n/a   
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  42.45 
 
 
217 aa  125  4.0000000000000003e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013235  Namu_4067  two component transcriptional regulator, LuxR family  40.2 
 
 
218 aa  125  4.0000000000000003e-28  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.352272 
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  42.06 
 
 
225 aa  125  4.0000000000000003e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_26900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  35.51 
 
 
247 aa  125  4.0000000000000003e-28  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00793239  normal  0.935402 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  43.14 
 
 
235 aa  125  6e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  41.63 
 
 
230 aa  125  6e-28  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  39.72 
 
 
234 aa  124  8.000000000000001e-28  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  40.1 
 
 
213 aa  124  8.000000000000001e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_3507  two component transcriptional regulator, LuxR family  41.23 
 
 
213 aa  124  9e-28  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.892641  n/a   
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  42.92 
 
 
225 aa  124  9e-28  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  42.79 
 
 
214 aa  124  9e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.31 
 
 
226 aa  124  9e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  41.67 
 
 
229 aa  124  1e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  39.46 
 
 
226 aa  124  1e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013739  Cwoe_0676  two component transcriptional regulator, LuxR family  39.53 
 
 
215 aa  124  1e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2710  two component transcriptional regulator, LuxR family  41.51 
 
 
230 aa  123  2e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.248821  normal  0.606697 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  40.47 
 
 
223 aa  124  2e-27  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  39.22 
 
 
216 aa  123  2e-27  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_013595  Sros_5499  response regulator receiver protein  41.06 
 
 
213 aa  123  2e-27  Streptosporangium roseum DSM 43021  Bacteria  decreased coverage  0.00659712  normal  0.108677 
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  40.1 
 
 
213 aa  123  2e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  36.28 
 
 
236 aa  122  3e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_013093  Amir_1617  two component transcriptional regulator, LuxR family  41.06 
 
 
214 aa  122  3e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  0.321528  n/a   
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  43.46 
 
 
225 aa  123  3e-27  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  39.53 
 
 
222 aa  122  3e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_009921  Franean1_1652  two component LuxR family transcriptional regulator  42.93 
 
 
217 aa  122  3e-27  Frankia sp. EAN1pec  Bacteria  normal  0.495895  normal  0.106337 
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  39.81 
 
 
226 aa  123  3e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_013530  Xcel_0759  two component transcriptional regulator, LuxR family  42.25 
 
 
221 aa  122  4e-27  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.174089  n/a   
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  40.29 
 
 
224 aa  122  4e-27  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  39.27 
 
 
219 aa  122  4e-27  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_013174  Jden_2514  two component transcriptional regulator, LuxR family  38.76 
 
 
230 aa  122  4e-27  Jonesia denitrificans DSM 20603  Bacteria  normal  0.135771  normal  0.887193 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  40.28 
 
 
227 aa  122  5e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0608  two component transcriptional regulator, LuxR family  42.92 
 
 
228 aa  121  8e-27  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  43.07 
 
 
221 aa  121  8e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  40.47 
 
 
227 aa  121  9e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
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