More than 300 homologs were found in PanDaTox collection
for query gene SeSA_A3299 on replicon NC_011094
Organism: Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011080  SNSL254_A3373  LysR family transcriptional regulator  99.12 
 
 
227 aa  466  1.0000000000000001e-131  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.322322  normal 
 
 
-
 
NC_011094  SeSA_A3299  LysR-family transcriptional regulator  100 
 
 
227 aa  469  1.0000000000000001e-131  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.212015  normal 
 
 
-
 
NC_011205  SeD_A3468  LysR family transcriptional regulator  99.12 
 
 
248 aa  466  9.999999999999999e-131  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0530935  normal 
 
 
-
 
NC_011083  SeHA_C3366  LysR family transcriptional regulator  97.8 
 
 
227 aa  459  9.999999999999999e-129  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.857101 
 
 
-
 
NC_011149  SeAg_B3294  LysR-family transcriptional regulator  98.21 
 
 
248 aa  454  1e-127  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.42203  n/a   
 
 
-
 
NC_009832  Spro_0618  LuxR family transcriptional regulator  59.13 
 
 
215 aa  249  3e-65  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1027  LuxR family transcriptional regulator  36.1 
 
 
222 aa  124  1e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1366  LuxR family transcriptional regulator  35.89 
 
 
235 aa  120  9.999999999999999e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0942  LuxR family transcriptional regulator  35.89 
 
 
235 aa  120  9.999999999999999e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  0.232709  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2465  LuxR family transcriptional regulator  35.89 
 
 
273 aa  120  1.9999999999999998e-26  Burkholderia pseudomallei 1710b  Bacteria  normal  0.54611  n/a   
 
 
-
 
NC_008784  BMASAVP1_0350  LuxR family transcriptional regulator  35.89 
 
 
259 aa  120  1.9999999999999998e-26  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0630  LuxR family transcriptional regulator  35.89 
 
 
273 aa  120  1.9999999999999998e-26  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0768185  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1199  LuxR family transcriptional regulator  35.89 
 
 
235 aa  119  3.9999999999999996e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  0.791762  n/a   
 
 
-
 
NC_009075  BURPS668_A1273  LuxR family transcriptional regulator  35.89 
 
 
273 aa  119  3.9999999999999996e-26  Burkholderia pseudomallei 668  Bacteria  normal  0.0925384  n/a   
 
 
-
 
NC_007650  BTH_II1538  LuxR family transcriptional regulator  34.93 
 
 
288 aa  115  5e-25  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_11180  putative transcriptional regulator  33.33 
 
 
222 aa  113  2.0000000000000002e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0312289  normal 
 
 
-
 
NC_010086  Bmul_3818  LuxR family transcriptional regulator  31.96 
 
 
264 aa  104  9e-22  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.0000221432 
 
 
-
 
NC_010515  Bcenmc03_5501  LuxR family transcriptional regulator  30.88 
 
 
242 aa  97.1  2e-19  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.926313 
 
 
-
 
NC_008061  Bcen_3585  LuxR family transcriptional regulator  30.88 
 
 
251 aa  97.4  2e-19  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.976883  n/a   
 
 
-
 
NC_008543  Bcen2424_4782  LuxR family transcriptional regulator  30.88 
 
 
251 aa  97.4  2e-19  Burkholderia cenocepacia HI2424  Bacteria  normal  0.134366  normal 
 
 
-
 
NC_007511  Bcep18194_B0930  LuxR family transcriptional regulator  30.77 
 
 
246 aa  96.3  4e-19  Burkholderia sp. 383  Bacteria  normal  0.6214  normal 
 
 
-
 
NC_010552  BamMC406_4689  LuxR family transcriptional regulator  31.65 
 
 
243 aa  93.6  2e-18  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4166  LuxR family transcriptional regulator  31.65 
 
 
243 aa  93.6  2e-18  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_3718  response regulator receiver protein  25.63 
 
 
264 aa  65.5  0.0000000006  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0474  response regulator receiver protein  55.36 
 
 
471 aa  62.8  0.000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.40168  normal  0.0487434 
 
 
-
 
NC_009767  Rcas_0145  LuxR family transcriptional regulator  60 
 
 
454 aa  62.8  0.000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2539  regulatory protein, LuxR  42.11 
 
 
904 aa  60.8  0.00000002  Pseudomonas mendocina ymp  Bacteria  normal  0.50873  hitchhiker  0.00362349 
 
 
-
 
NC_012850  Rleg_4328  transcriptional regulator, LuxR family  50 
 
 
260 aa  60.5  0.00000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00000000127099  normal  0.0225245 
 
 
-
 
NC_011831  Cagg_2569  transcriptional regulator, LuxR family  57.69 
 
 
508 aa  60.8  0.00000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0757  LuxR family transcriptional regulator  47.06 
 
 
210 aa  60.1  0.00000003  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0564  two component LuxR family transcriptional regulator  39.6 
 
 
197 aa  59.7  0.00000003  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3999  transcriptional regulator, LuxR family  50 
 
 
260 aa  59.7  0.00000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.0000000117104  normal 
 
 
-
 
NC_013457  VEA_001275  transcriptional regulator VpsT  50.88 
 
 
222 aa  58.9  0.00000006  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2837  response regulator receiver protein  49.09 
 
 
262 aa  58.9  0.00000007  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00000311945  normal  0.812847 
 
 
-
 
NC_013165  Shel_17930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.38 
 
 
258 aa  58.2  0.0000001  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.265474  normal 
 
 
-
 
NC_010506  Swoo_0644  LuxR family transcriptional regulator  46.15 
 
 
221 aa  57.4  0.0000002  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0140532  unclonable  0.00000001613 
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  46.77 
 
 
227 aa  57.4  0.0000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_009656  PSPA7_3548  transcriptional regulator  37.23 
 
 
924 aa  57.4  0.0000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_41810  putative transcriptional regulator  41.1 
 
 
901 aa  57.4  0.0000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1148  regulatory protein LuxR  51.79 
 
 
921 aa  57.4  0.0000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.108504  normal 
 
 
-
 
NC_008740  Maqu_0164  response regulator receiver protein  44.64 
 
 
128 aa  57.4  0.0000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2396  transcriptional regulator, LuxR family  33.64 
 
 
363 aa  56.6  0.0000003  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000296074  decreased coverage  0.0001884 
 
 
-
 
NC_007908  Rfer_4208  ATP-dependent transcription regulator LuxR  39.02 
 
 
894 aa  56.6  0.0000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0582  two component transcriptional regulator, LuxR family  41.54 
 
 
204 aa  56.6  0.0000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5812  transcriptional regulator LuxR family  39.78 
 
 
894 aa  56.6  0.0000003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011371  Rleg2_6421  two component transcriptional regulator, LuxR family  46.55 
 
 
251 aa  56.6  0.0000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.872179  normal 
 
 
-
 
NC_009972  Haur_1506  ATP-dependent transcription regulator LuxR  44.26 
 
 
876 aa  56.6  0.0000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1228  LuxR family transcriptional regulator  53.7 
 
 
204 aa  56.6  0.0000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.118696  normal 
 
 
-
 
NC_008825  Mpe_A0763  ATP-dependent transcriptional regulator-like protein protein  52 
 
 
919 aa  56.6  0.0000003  Methylibium petroleiphilum PM1  Bacteria  normal  0.422144  normal 
 
 
-
 
NC_009523  RoseRS_0799  response regulator receiver protein  53.7 
 
 
204 aa  56.2  0.0000004  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.403434 
 
 
-
 
NC_008025  Dgeo_1626  two component LuxR family transcriptional regulator  43.55 
 
 
194 aa  56.2  0.0000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.947018 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  48.08 
 
 
235 aa  56.2  0.0000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_008532  STER_1387  DNA-binding response regulator  49.12 
 
 
214 aa  56.2  0.0000004  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.00141106  n/a   
 
 
-
 
NC_009972  Haur_1728  ATP-dependent transcription regulator LuxR  46.43 
 
 
870 aa  56.2  0.0000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  54.55 
 
 
221 aa  56.2  0.0000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.133182 
 
 
-
 
NC_009511  Swit_4199  regulatory protein, LuxR  53.85 
 
 
855 aa  55.8  0.0000005  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.142655 
 
 
-
 
NC_010506  Swoo_0228  LuxR family transcriptional regulator  23.3 
 
 
238 aa  55.8  0.0000005  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03368  predicted DNA-binding response regulator in two-component regulatory system  47.46 
 
 
200 aa  55.5  0.0000006  Escherichia coli BL21(DE3)  Bacteria  decreased coverage  0.000358261  n/a   
 
 
-
 
CP001637  EcDH1_0193  transcriptional regulator, LuxR family  47.46 
 
 
200 aa  55.5  0.0000006  Escherichia coli DH1  Bacteria  decreased coverage  0.000000210245  n/a   
 
 
-
 
NC_011353  ECH74115_4883  transcriptional regulator, LuxR family  47.46 
 
 
200 aa  55.5  0.0000006  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03321  hypothetical protein  47.46 
 
 
200 aa  55.5  0.0000006  Escherichia coli BL21  Bacteria  decreased coverage  0.00023179  n/a   
 
 
-
 
NC_010468  EcolC_2559  DNA-binding transcriptional regulator CsgD  53.57 
 
 
216 aa  55.5  0.0000006  Escherichia coli ATCC 8739  Bacteria  normal  0.980478  normal  0.382247 
 
 
-
 
NC_009620  Smed_4059  two component LuxR family transcriptional regulator  45.45 
 
 
212 aa  55.8  0.0000006  Sinorhizobium medicae WSM419  Bacteria  normal  0.111025  normal 
 
 
-
 
NC_007348  Reut_B3832  regulatory protein, LuxR  44.44 
 
 
1336 aa  55.8  0.0000006  Ralstonia eutropha JMP134  Bacteria  normal  0.196603  n/a   
 
 
-
 
NC_010658  SbBS512_E3925  transcriptional regulator, LuxR family  47.46 
 
 
200 aa  55.5  0.0000006  Shigella boydii CDC 3083-94  Bacteria  normal  0.237516  n/a   
 
 
-
 
NC_009800  EcHS_A3723  LuxR family transcriptional regulator  47.46 
 
 
200 aa  55.5  0.0000006  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1253  DNA-binding transcriptional regulator CsgD  53.57 
 
 
216 aa  55.5  0.0000006  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.705931 
 
 
-
 
NC_009800  EcHS_A1158  DNA-binding transcriptional regulator CsgD  53.57 
 
 
216 aa  55.5  0.0000006  Escherichia coli HS  Bacteria  normal  0.354651  n/a   
 
 
-
 
NC_011353  ECH74115_1419  DNA-binding transcriptional regulator CsgD  53.57 
 
 
216 aa  55.5  0.0000006  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.132272 
 
 
-
 
NC_011080  SNSL254_A1238  DNA-binding transcriptional regulator CsgD  53.57 
 
 
216 aa  55.5  0.0000006  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.147361  normal 
 
 
-
 
NC_011149  SeAg_B2048  DNA-binding transcriptional regulator CsgD  53.57 
 
 
216 aa  55.5  0.0000006  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0804096  n/a   
 
 
-
 
NC_009801  EcE24377A_1159  DNA-binding transcriptional regulator CsgD  53.57 
 
 
216 aa  55.5  0.0000006  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2231  DNA-binding transcriptional regulator CsgD  53.57 
 
 
216 aa  55.5  0.0000006  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.750523  normal  0.99411 
 
 
-
 
NC_009801  EcE24377A_4008  LuxR family transcriptional regulator  47.46 
 
 
200 aa  55.5  0.0000006  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2093  DNA-binding transcriptional regulator CsgD  53.57 
 
 
190 aa  55.5  0.0000006  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.661259 
 
 
-
 
NC_010498  EcSMS35_3824  LuxR family transcriptional regulator  47.46 
 
 
200 aa  55.5  0.0000006  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.201276 
 
 
-
 
NC_011094  SeSA_A1208  DNA-binding transcriptional regulator CsgD  53.57 
 
 
216 aa  55.5  0.0000006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.316434  normal  0.419874 
 
 
-
 
NC_010468  EcolC_0197  two component LuxR family transcriptional regulator  47.46 
 
 
200 aa  55.5  0.0000006  Escherichia coli ATCC 8739  Bacteria  decreased coverage  0.000437068  normal 
 
 
-
 
CP001637  EcDH1_2605  transcriptional regulator, LuxR family  53.57 
 
 
216 aa  55.5  0.0000007  Escherichia coli DH1  Bacteria  normal  0.196673  n/a   
 
 
-
 
NC_009784  VIBHAR_05152  protein-glutamate methylesterase  51.92 
 
 
222 aa  55.5  0.0000007  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012560  Avin_39970  transcriptional regulatory protein AcoK, LuxR family  45 
 
 
900 aa  55.5  0.0000007  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  40.54 
 
 
213 aa  55.5  0.0000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_009092  Shew_0653  LuxR family transcriptional regulator  38.89 
 
 
206 aa  55.1  0.0000008  Shewanella loihica PV-4  Bacteria  normal  normal  0.203226 
 
 
-
 
NC_007951  Bxe_A3567  ATP-dependent transcription regulator LuxR  46.43 
 
 
251 aa  55.1  0.0000008  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4801  two component LuxR family transcriptional regulator  47.27 
 
 
259 aa  55.5  0.0000008  Sinorhizobium medicae WSM419  Bacteria  normal  0.433912  normal 
 
 
-
 
NC_008740  Maqu_1584  regulatory protein, LuxR  37.1 
 
 
916 aa  55.1  0.0000009  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01037  DNA-binding transcriptional activator in two-component regulatory system  55.56 
 
 
216 aa  54.7  0.000001  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3565  regulatory protein LuxR  48.15 
 
 
376 aa  54.3  0.000001  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6225  two component transcriptional regulator, LuxR family  48.21 
 
 
258 aa  54.7  0.000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.173155 
 
 
-
 
NC_007348  Reut_B4164  LuxR transcriptional regulator  42.53 
 
 
960 aa  54.3  0.000001  Ralstonia eutropha JMP134  Bacteria  normal  0.950161  n/a   
 
 
-
 
NC_011094  SeSA_A3800  putative transcriptional regulator  50 
 
 
200 aa  54.7  0.000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3813  putative transcriptional regulator  50 
 
 
200 aa  54.7  0.000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3373  two component LuxR family transcriptional regulator  27.95 
 
 
262 aa  54.7  0.000001  Rhodoferax ferrireducens T118  Bacteria  normal  0.492418  n/a   
 
 
-
 
NC_013235  Namu_0324  transcriptional regulator, LuxR family  49.02 
 
 
938 aa  54.7  0.000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1995  ATP-dependent transcription regulator LuxR  41.07 
 
 
1019 aa  54.7  0.000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.686742  n/a   
 
 
-
 
NC_010511  M446_1716  LuxR family transcriptional regulator  41.94 
 
 
118 aa  54.3  0.000001  Methylobacterium sp. 4-46  Bacteria  normal  0.18507  normal 
 
 
-
 
NC_011205  SeD_A3981  putative transcriptional regulator  50 
 
 
200 aa  54.7  0.000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.347336 
 
 
-
 
NC_009921  Franean1_3799  LuxR family transcriptional regulator  46.43 
 
 
952 aa  54.3  0.000001  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00558742  normal 
 
 
-
 
NC_009921  Franean1_5410  LuxR family transcriptional regulator  46.43 
 
 
952 aa  54.3  0.000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3764  two component LuxR family transcriptional regulator  43.4 
 
 
232 aa  54.3  0.000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
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