| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5812 |
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| Symbol | |
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| ID | 7380599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 831960 |
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| End bp | 834644 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649349 |
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| Product | transcriptional regulator LuxR family |
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| Protein accession | YP_002547586 |
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| Protein GI | 222106795 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTTCA CTCTGCGATT TCAGCCCCCG ATCAGTACCC AGAGCGCGAT CAAGCGCAGG
GCAATCCTGT CGCATCTTTC CGCTGGCGGA TTGAAACGGG TGACCACCAT CATTGCGCCG
GCTGGCTATG GCAAGACATC CCTGGCTGCG CAATGGTTCG ATACCCTGCG CGCCGAAGGC
TACAGCCTCT CCTGGCTTGC GCTGGATCAG GAATATAGCG ACCAGACACA GTTCCTCCTG
TTGCTGCTGG AAGCCGTCAA CGCCCTGCGT CTGGAAGAAG GCACAGGTGT TGATTCCAGC
ATGACCGTCG CCTCGCTTCT GGCCTTGTTA TCCACGCGGT TGCGCAAGAT CACCGAGCCG
GTCATCCTGT TTCTGGATGA CTATCACTTC GCCCAGACCG ATGCGACCGA GGCAATCGTC
GCGCGCCTGT TGGGCGACCA GACTCTGAAC CACCTGAAGC TGGTGCTGAT TTCGCGCACG
CCACCGCGTT TTCCGGTATC CGCACTGCGG TTGAAAGGCG AATTCCGCCA GGTCAATATT
GCCGAACTGG GGTTTTCCGA CCAGGAAGCT GAGGAGTTTT TTGCCGGACA GACTGCCAGC
TTGAGCCGGG AGCAAGTCGC TGGGCTCAAT AAAAGGACGG AAGGCTGGGC GGTTGCCTTG
CAGATGATCC GGTTGCTGAT TGCCGAAAAT GTCGATGGCG GCACGCTGTT CACCACCTTC
GACGGCGGCA ATGCCGAAAT GGGTAGCTAT TTGTCGGAGC AGGTGTTTGC CAATCTGCCT
GAAGATGTGC AGGAACTGCT TTTAAAGACT GCGCCTTTCC CTACCGTCAA TCGCGATCTC
GTCGAGGCCG TCTTCGCCGA TGCCCATAGC GCCGACTTGC TTGGCAAGTT GGGAGATCAT
GCCCTGCCGG TCGCCCTCCT GGCTGGCGGT GGCGGCTGGA TCCGCTACCA TCCGGTTTTC
AATGCCTTCC TGAAGGAAGA GGCCGCTCGA CGTGGCTATC AAGTCCAGGA TGTTCTGGAA
CGGGCAGCGC GCTGGTTCCA AACAACAGGT GATTTCGATG CTGCCGTGCG CCATGCGCTG
ATGAGTGGCA ATGCCAATCT GGCCGCGGAA ATCGTCGAGA CCAGCGGCGG CTGGCGGCGG
GTCTATACGA CCAGCCGAGG GGGTGCCAGC GTGTTCAACT CCATTATGGC CAATGTTTCG
GCCATTGATC TCACCTGTTT TCCACTGACC ACGCTTGGCC TGTCGGTGGT CAGTGCCAAA
GCCGGGCATC TTGATGCCGC CAACCATTAT CTCGGCATTG CGGAGAGGGC CGACACGGCT
GCTCCGGATA CGTTTACCAG TGATCTGCGA GTGGTCCGTG TGCTGCTGGG GCTGTATTTC
GACCGCCCTG CCTGCGCCGA AGACTTGGCC GCATTGGAAA ACGATCTGAC AGACATTGCC
AGCACCGAAC TCGTACACCG CGCCATGGTG TTGAATATGC TGTCTTATAA TTTCCTCGAC
CGCAGCGACA TGGATCGGGC CTTGCATTAC GGCCATCTTG CGGTTCAGAC GTTCCGTGAC
GGCGGTGCTG ATTTCGGCGC GGTACATCTT TACACCCATA TCGGCCAAGC TGCTTTTTTC
AGTGGCGATT GCTCCGGCGC TGAGGAGTAT TATCAGCAGT TGATCGATGA AGTGCAGGCC
TGCATTGGCA AGGGCACCGA TCTCGACGCC TTGGGACAGG TGCTCAAGGC AGAATTGCTG
GTCATGCGTG GCGATCTGGA GGCCGCCGGG CCTTGTCTGC GCTGGGCCTT GCCGCATCTG
GAGCGCCATG ATGCCTGGTT CGATCTTCTG GCCGCTGGGT TTACCGCCCA GCAGATGATC
TTCCGACTAG AGGGCGACAT GACCGCGGCC CATGCGCTGG CGGACCGGAC ACGGTCGGCG
GCCAAGCGGC GTGGTTTTCA TCGGTTGATC CGGCTGATCG ACGGCGCCCG GGTGTTGCTC
CTGTTGGAAA GCGGTGATGT TGAGCAGGCG ATTCGCTACG CAAAGGCCCA TGGCTTCGGC
ATGGAAGACA TCACCTCGGT GCCGGATAAT AATCTGGCGA TCCATTTGCG TGGATTGACG
CCGGCTCTGC TTTGGGCACG CATCCATTTG GTTCGCGGCG ATCTCGAGCG CGCCAGACAA
GCGCTTTCCA TCCTGATTAG CCAGCAACTA ACGAAAATCC ACGATCTTCG CAGCGTGGAA
CTGGCGCTTC TCGACATGCG TCTGTTGATT GCCGAGGAAA AACGCGAGAT CGTTGCGGCC
CGCTTGGAAG ATCTGCTGTT GACCTTTCCG ATGGAAGATT TTCGGGCCAT GATCTGGATT
GAAGGCGACG ATTTCCTGGG CGATCTCAGG GCAATTGCCG AGGAAAGTCC GATGTCGGCA
GTTCTGCGTC AACGGCTACA AGCCCTGCTA CCGGAAGGAA AGGTGGCGCC GGAGACCAGC
GAAGACATGC CGCTTCACGG TCTCTCGTCA TCCGCGCTGA CAGACAGAGA ACTTGCTGTC
ATGGCGCTGC TCAGCCAGGG CTTCAGCAAT AAGGAAATCG GTCGTAAACT GGCCTTGAGC
GACAACACCA TCAAATTTCA TCTGCGCAAT ATTTTCGCAA AGCTCAAGGT CACTACCCGC
ACCGCCGCGG TCGGTGCCGC TCGCCGCGCT GGCATCTCAC TGTAA
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| Protein sequence | MNFTLRFQPP ISTQSAIKRR AILSHLSAGG LKRVTTIIAP AGYGKTSLAA QWFDTLRAEG
YSLSWLALDQ EYSDQTQFLL LLLEAVNALR LEEGTGVDSS MTVASLLALL STRLRKITEP
VILFLDDYHF AQTDATEAIV ARLLGDQTLN HLKLVLISRT PPRFPVSALR LKGEFRQVNI
AELGFSDQEA EEFFAGQTAS LSREQVAGLN KRTEGWAVAL QMIRLLIAEN VDGGTLFTTF
DGGNAEMGSY LSEQVFANLP EDVQELLLKT APFPTVNRDL VEAVFADAHS ADLLGKLGDH
ALPVALLAGG GGWIRYHPVF NAFLKEEAAR RGYQVQDVLE RAARWFQTTG DFDAAVRHAL
MSGNANLAAE IVETSGGWRR VYTTSRGGAS VFNSIMANVS AIDLTCFPLT TLGLSVVSAK
AGHLDAANHY LGIAERADTA APDTFTSDLR VVRVLLGLYF DRPACAEDLA ALENDLTDIA
STELVHRAMV LNMLSYNFLD RSDMDRALHY GHLAVQTFRD GGADFGAVHL YTHIGQAAFF
SGDCSGAEEY YQQLIDEVQA CIGKGTDLDA LGQVLKAELL VMRGDLEAAG PCLRWALPHL
ERHDAWFDLL AAGFTAQQMI FRLEGDMTAA HALADRTRSA AKRRGFHRLI RLIDGARVLL
LLESGDVEQA IRYAKAHGFG MEDITSVPDN NLAIHLRGLT PALLWARIHL VRGDLERARQ
ALSILISQQL TKIHDLRSVE LALLDMRLLI AEEKREIVAA RLEDLLLTFP MEDFRAMIWI
EGDDFLGDLR AIAEESPMSA VLRQRLQALL PEGKVAPETS EDMPLHGLSS SALTDRELAV
MALLSQGFSN KEIGRKLALS DNTIKFHLRN IFAKLKVTTR TAAVGAARRA GISL
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