| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3799 |
|---|
| Symbol | |
|---|
| ID | 5672163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4503917 |
|---|
| End bp | 4506775 |
|---|
| Gene Length | 2859 bp |
|---|
| Protein Length | 952 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641242678 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001508098 |
|---|
| Protein GI | 158315590 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3899] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00558742 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGGTG ATGATCGCCC GTTCGTCGGG CGGCTGGAGG AGTTGACGCT GTTGCGTTCG
CGGGCGCGGA CGGCGGAGGC GGGTCGGGGC GGTGTCGTGT TGGTGACCGG CCCGGCGGGG
ATCGGCAAGA CCCGGTTGGT GGAGGAGGCG TTGCGGGGGG GTGCGAGGCC CCCGGCCAGC
CCGCCGGCGG GCGTGTCGGC GGCGGTGCGG GTCGGCCGTG GCTACAGCCT CCCCGACCAT
GCCGCTCCGG CGCTGTGGCC CTGGCAGCAG GCGCTGCGCG CCCTCGCTCG CCGCAGCGGG
TGGCCGGCGA GGATCTCCTC GGCCGTGGAT TTGCTGGAGG GGGCCGGAGG CTGCGACGCA
CCTGGCGGCG CTCCTGGTGA CGTGGCGAGC GCGGCCGCCG TGCGGTTCGC CGCCCTGGCC
GCGGTCGCCG ACGCGGTGCT GACGGCCGCC GCCGAACCAC TGGTGATCGT GTTGGAGGAT
CTGCACTGGG CCGACACGAA CACCGTCGAG CTGGTGCGGC AGGTCGCCGG CGGGATCGTC
GACAGCCACC TGCTGCTGAT CGCGACGATG CGCGCCGAGG CCGGCGACGT CATGCGTGAG
CTGTCCCGGC TGGGCAGCGT CCACGCCGTG CCGTTGCGGC CGCTGACAGT GGCCGCTGTC
GGGGACTATC TCACCGCGCT CGACCCGGCG GTCTCCTCCG CCGCCCGCGC GGAGCAGGTG
GCGCGGCGCA GCGGCGGGCT GCCGCTGCTG CTCGACGCGG CGGCGTCCGA CGCCGCCGCC
CCCGAACCGG TCGTCGTCCG TGACCTCGTC GAGGCACTGC TGGCTCAGCT TCCGGAGCCG
GCGCGGCGCG TTGTCCAGGT CGCCGCGTTG CTGCGCTCGC CGGTGGACAC CGACGTGGTC
GGCCAGGTTG CCGAGGTCGA CGGGTCGATG GCCGGGCTGG CGCTCGACGC GGCGTGCCGG
GCCGGTCTGC TGACGCCGGT GACCTCGTGG GCCGGGGTCG AGGGACTGGG GTTTGCCTTC
ACCCACGGCC TGCTGGCCGA GGGGCTGGCG GACCTTCTCG ACCCGGTCGA GGGGCGCGAG
ATCCACCGGC GTGCCGCCAT CACGTTGCAG GTGCGACCGT CGGCCTTACC CGGGCTCGCC
GCCGCGGTCG CCGGTCACTG GCGCCGTGCC GGCGGCGACG AGCAGGCACA GCGCTGCGCG
GCCCGGTGGG CGAGGCAGGC CGCTGTCGAG GCCGTCCAGG CATTGGCCTA TGACGAGGCG
GCCACGCACC TGCTCACCGC GGTAGCGGCG CTGCGGCAGG CTGGTGCCGG TGAGGCGGAA
CTCGCGCAGA TGACGTTGGA GCTGGCGCGC GCCTACTACC TGGCCGGAGC GCTGACCGAA
GCGCTCCGGC AATGCGAACA GACCGCTGCG GCGGCGCAGC GGGCAGGCAG GGACGACCTG
GTGGCCGCGG CGGCGCTGGT GGTGCGTGGG GTGACCTTCC CGCAAGCCAT CGAGGCGATC
TCCCGGCTGT GCCGCACGGC GCTCGCCGCA CAGCAGCCGG CCGCATTGCG GGCCCAGCTG
CTGTCCCAGC TCGCCACGAT CCTGGGCGAG GCCGGCTCCA CGGAGGCGGC CCGCCGGCAC
GTCGACGAGG CGATGGAGCT CGCGCAGGCG AGCGGCGACG CCCAGGCGTT GCTGGATGCC
GCCCGCGCCC GGGAGATGTC GCTGGCCGGT CCGGACGACG CGGAGGAACG GCTGCGGCTG
GCCGCGACCG CCGTCGAGCA GGCCGATCGG CTCGGCCAGC CGCTGGCCGC CGTACTCGGG
CAGCAGTGGC GGATCAGGGC CGCCTACCAG CTCGGTCGTC TCGACGTCGT GGACGAGGCG
ATGGCCGCCG TCGCGATGCT GGCTGACCGC AGCGGCCTTC CGTTGGCGAG CTGGCATCGG
TTGCGCGGCG CGGCGGCCCG AGCCGCGTTG GAAGGCAGGT TCGCCGCCGC GCGGTCGGCC
AACCTTGAGG CCCAGCGGCT GGGCTCGCGG GCCGGAGACG CGCAGGCGGC CGGCCTGAGC
TACGCCTTCG CCGCCCACCT GGCCATGCTG CGAGGGGACG CCGCCGAACT CCCGGACGAC
TTCTGGCCGA TGCTGGAAGC ATTCCCGTCG TCGCCGCTGA TGACGGTGTT CCGTGCCAAC
GCTCTCCGAC TCGAGGGCCG CCGCGAGGCG GCGAAGGCAT ACTACGAGCA GCTGCGTCAG
ATGCTCGACG ACCCGGTCGT CGATCTCCGC TGGGGCGGGG TACTGACGCA GCTGATCGAC
CTGGTCGAGG CATTCGGGGA CCCTCCGGCA GCGGAGGTGC TCGCCACCCA CCTGAAGCCC
TACGCCGCGT ACTCGGGGGC GGTCGGAACA CCGACGGTCT TCTTCGTTGG CTGTGCGCAG
GGCCACTACG GGCGCGCGCT GGGCCACGCG GGAGAGCTGC GCGACGCCAA GACGGCGCTA
CGGACGGCGA TCACGCGTGA CGCCGCGCTC GGCGCGCGCC CTCACATCGT GCTCAACCAG
CTGGCCCTCG CCGACGTGCT GCGCCGCCTC GACGACCCTC ACGCCGCCGT GACCCTCGCC
GGCGCGGCCG CGGCCGAGGC TCGCCGGCTG GACATGCCCG GGCCGCTGGC CCGCGCCGAC
CAGCTGCTCG CCGACCTGGC GGCCGCCCGC CGAGAGACCG ACCCACTGAC TGCCCGCGAG
CACGAGGTGG CCGCGCTCGT CGTCCAGGCC ATGTCCAACC GGGAGATCGC GGCACGGCTG
GTACTCAGCG AACGCACCAT CGAAAGCCAC GTCCGCTCAA TCCTCGCCAA ACTCGGCTAC
ACCAACCGGA CCGAGCTGGT CGCACGCTGG CGGCCCTGA
|
|---|
| Protein sequence | MRGDDRPFVG RLEELTLLRS RARTAEAGRG GVVLVTGPAG IGKTRLVEEA LRGGARPPAS
PPAGVSAAVR VGRGYSLPDH AAPALWPWQQ ALRALARRSG WPARISSAVD LLEGAGGCDA
PGGAPGDVAS AAAVRFAALA AVADAVLTAA AEPLVIVLED LHWADTNTVE LVRQVAGGIV
DSHLLLIATM RAEAGDVMRE LSRLGSVHAV PLRPLTVAAV GDYLTALDPA VSSAARAEQV
ARRSGGLPLL LDAAASDAAA PEPVVVRDLV EALLAQLPEP ARRVVQVAAL LRSPVDTDVV
GQVAEVDGSM AGLALDAACR AGLLTPVTSW AGVEGLGFAF THGLLAEGLA DLLDPVEGRE
IHRRAAITLQ VRPSALPGLA AAVAGHWRRA GGDEQAQRCA ARWARQAAVE AVQALAYDEA
ATHLLTAVAA LRQAGAGEAE LAQMTLELAR AYYLAGALTE ALRQCEQTAA AAQRAGRDDL
VAAAALVVRG VTFPQAIEAI SRLCRTALAA QQPAALRAQL LSQLATILGE AGSTEAARRH
VDEAMELAQA SGDAQALLDA ARAREMSLAG PDDAEERLRL AATAVEQADR LGQPLAAVLG
QQWRIRAAYQ LGRLDVVDEA MAAVAMLADR SGLPLASWHR LRGAAARAAL EGRFAAARSA
NLEAQRLGSR AGDAQAAGLS YAFAAHLAML RGDAAELPDD FWPMLEAFPS SPLMTVFRAN
ALRLEGRREA AKAYYEQLRQ MLDDPVVDLR WGGVLTQLID LVEAFGDPPA AEVLATHLKP
YAAYSGAVGT PTVFFVGCAQ GHYGRALGHA GELRDAKTAL RTAITRDAAL GARPHIVLNQ
LALADVLRRL DDPHAAVTLA GAAAAEARRL DMPGPLARAD QLLADLAAAR RETDPLTARE
HEVAALVVQA MSNREIAARL VLSERTIESH VRSILAKLGY TNRTELVARW RP
|
|---|
| |