| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2539 |
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| Symbol | |
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| ID | 5108006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2801034 |
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| End bp | 2803748 |
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| Gene Length | 2715 bp |
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| Protein Length | 904 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640503783 |
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| Product | regulatory protein, LuxR |
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| Protein accession | YP_001188027 |
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| Protein GI | 146307562 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.50873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.00362349 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATGAAG TTATCGATCC AGCCGCTGGA AGCCTGCTAC GTTCGAAACT CTCGCCACCC
CAGGCCGCTT CGGACTATCT GGCAAGGCCC CAGGTCGAAG CTGCGCTTTT AGCCCATCCG
CATGCCCGTC TCGTGCTGTT TTCCGCCCCG GCGGGCTTTG GCAAGACCAC TGCCCTGGCG
ATGCTCGCCA GCGAACGCCG CCATGCCGGC GCCGCCGTCG CCTGGCTGTC GCTCGGCCCC
GGCGACGACG AGCCGGTGCG CTTCTTCCAG CAGCTCATAG ACGCCCTCGG CCGCGCGCTG
CCCGGCCTGG GCGAGGATGC CCTGGGCTAT CTGCGCAACA CCATGCGGGT GCCGGTCGAG
GCCGTCATGG AGAGCCTGCT GGTCGACCTG GCGCAGCGCC AGGAGCCGCT GCTGCTGGTG
CTCGACGATC TGCACCTGAT CCAGGACGCG GAACTGCTCG CCGCGCTCAA CCGCCTGGTC
AAGCTGGCGC CGCCGAACTT CACCCTGGCC ATCGGCAGTC GTTCGCAACC GCCGCTGAGC
CTGGCCACGC TGCGCGCCAA GGGCCAGTTG CTGGAGCTCG GCAGCGAGGA GCTGCGGCTC
AACCCGGAGG AGGCGCGCAG CTACCTTGAA CGCAGCGGCC TGCAGCTCGA TGGCGAGGCC
TTCGCCGCGC TGTACAGCCA TACCGAGGGC TGGATGATCG GCATGCACCT GGCCAGCCTG
TGGCTGCGCC ATCAGCCCCA GCCGGTGCAG CAGATGGCCG AGATGGGCGC GGACCAGGGC
GCGGTGGGCG ATTACCTGCT GCGTTCGGTG TTCGAGCAGT TGCCGCAGGA GCGTCAGGAG
CTGCTGCTGG CGTTGGGCGT GGCGCAGCAG CTCAGCGGCG ATCTGGCCAA CGCGCTGACC
GGCCGCCACG ATGGCCAGCA GTTGCTGGAG GAGCTGGAGG CCATGCAGCT GTTTCTCCTG
CCGCTGGACC GCGAGCGGCA GTGGTATCGC TTCCATAACC TGTTCGCCGA GTTCCTGCGC
ACCCGCCTCC GGGAGCGTGA CCCGGAGCGC TTCAAGCAGC TGCATTTCAA TGCCAGCCTG
TGGTTCACCA ACCACCACAT GCAGAACCTG GCCATCGAGC ACGCCTGCCT GGCCGAGGAT
GCCGAGATGC TCGCCGCGCT GCTCGACGGC TGCGGCCTGG AGCTGATCAA CCGTGGCCAG
TTGCACCTGA TCCACAGCTG GCGCCAGCAC GTGCCCGACG CCATTGCCGA GCGCTATCCG
ATGCTGGTGC TGGTGGATGT CTGGAGCCGC GCGGCCGAGC TGGGCCTGGC CGAGGCCAAC
CGTCTGCTCG ACGAGTTGCT GCAGCGCTGG GGGCAGGGCG GCGACAGCGG GCCGCTGAGC
GAGCAGATGT TCGCCGCCCT GGCGGTCAAG GCGGTGATCG CCATGCAGAA GGACGACCTG
GATACCTGCG TGAGCCTGGC GCGGCGCATC GAGGCGCAGC TCGGCCAGCA CACCGCGTTT
CTCGAGGTGG CGATCCTCAC CGTCGGCGCC CTGGCCCACG TCATGCTCGG CCAGGCCGAG
CAGGCGCGCA AGCTGCTGGC GCTGGCGCAG CAGCGCAACC ACTTCCTCGA AGGCCGTTAC
CTGGACATGC AGCTGGCCAA CGTGGAGATC CTCCTGTGCC TGGAACAGGG GCGGATCAAG
CAGGCGCAGT TGCTCTTCGA GCAGTTGCGC ACGCGGATGA TGCCCTGGTT CGGCGAGCAG
TCCCGGGCCC TGGTGCTGCC GGCCATCAGC GACGCGCTGA TCGCCTACCA CCAGGGGCGC
CTGGACGGCT TGCCGGAGCG GTTGCGCTGG GCCCTGGCCG CGGTCGACGT GATCAACCCC
ATCGATCTCT ATGCGCAGGC CATGCTCTGC CTGGCGCGGG TGCAGCGCCT GCACGATGCG
CCCAAGGAGG CGGCCGCGAC CCTGGTGCTG ATGCAGAACC TGGCGGCGCG CAACCACTCC
TGGCGCTTCT ACGCGCAGGC GGTCGGCGAG GAAATCGCCC TGATCCTGCA GGAGCCGGCG
GCCGACCGCA GCCGGCGGGC CGAGCAGCGC CTGAAGTCGG TGGACTGGGC CAAGCTGGCT
GCGCACTACA AGCAGCGCAA GTTCAACCCC GTGCTCTGGG TGCTGGGCCT GACCCGCATC
CGCCTGCAGC AGGCGCGCGG CCATTACAGC GAAGCGCTGC ACGAGATCAC CCAGCTGCGC
AGCCAGTTGC AGAACGACTG GCACGGTCTG CACCGTCTGC GCCTGGATCT GCTGGCCGCG
CTCAGTTATC AGCGCCTGGG TTATCAGGAG CGCGCACAGA GCCTGCTGGT GCAATGCCTG
ATCGGCGCCG AGCGGGAAGA AGCGCGCAGC CTGTTCATCG AGGAAGGCGA AGCCATCCGC
CAACTGCTGC AGCAACTCGA ATCGGCCGAG CGCCAGCCGG CGCTGCAGGG CTTTCTGCGC
AGCCTGCTGG TGATCTGGCC GGGGCAGGAG TCGCGCCAGG CCCTGGACGT GCTGGAGGAG
GGCCTGACCG AGCGCGAGCG CGAGGTGGTC TGCCTGGCGG CCAAGGGCCT GTCCAACGAA
GAGATCGGCC AGCAGCTGTC ACTGGCTCTG GGCACCGTCA AATGGCACCT GCACAACATC
TACGAAAAGC TCAAGGTGCG TAATCGCACT CAAGCCATCC GCCGCGCCCG CGAACTGAGC
CTACTCGAAT CATGA
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| Protein sequence | MDEVIDPAAG SLLRSKLSPP QAASDYLARP QVEAALLAHP HARLVLFSAP AGFGKTTALA
MLASERRHAG AAVAWLSLGP GDDEPVRFFQ QLIDALGRAL PGLGEDALGY LRNTMRVPVE
AVMESLLVDL AQRQEPLLLV LDDLHLIQDA ELLAALNRLV KLAPPNFTLA IGSRSQPPLS
LATLRAKGQL LELGSEELRL NPEEARSYLE RSGLQLDGEA FAALYSHTEG WMIGMHLASL
WLRHQPQPVQ QMAEMGADQG AVGDYLLRSV FEQLPQERQE LLLALGVAQQ LSGDLANALT
GRHDGQQLLE ELEAMQLFLL PLDRERQWYR FHNLFAEFLR TRLRERDPER FKQLHFNASL
WFTNHHMQNL AIEHACLAED AEMLAALLDG CGLELINRGQ LHLIHSWRQH VPDAIAERYP
MLVLVDVWSR AAELGLAEAN RLLDELLQRW GQGGDSGPLS EQMFAALAVK AVIAMQKDDL
DTCVSLARRI EAQLGQHTAF LEVAILTVGA LAHVMLGQAE QARKLLALAQ QRNHFLEGRY
LDMQLANVEI LLCLEQGRIK QAQLLFEQLR TRMMPWFGEQ SRALVLPAIS DALIAYHQGR
LDGLPERLRW ALAAVDVINP IDLYAQAMLC LARVQRLHDA PKEAAATLVL MQNLAARNHS
WRFYAQAVGE EIALILQEPA ADRSRRAEQR LKSVDWAKLA AHYKQRKFNP VLWVLGLTRI
RLQQARGHYS EALHEITQLR SQLQNDWHGL HRLRLDLLAA LSYQRLGYQE RAQSLLVQCL
IGAEREEARS LFIEEGEAIR QLLQQLESAE RQPALQGFLR SLLVIWPGQE SRQALDVLEE
GLTEREREVV CLAAKGLSNE EIGQQLSLAL GTVKWHLHNI YEKLKVRNRT QAIRRARELS
LLES
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