| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0653 |
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| Symbol | |
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| ID | 4922172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 740084 |
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| End bp | 740704 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640162186 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_001092784 |
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| Protein GI | 127511587 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.203226 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATAATG GTGAATTATT TACCCTAAGC CGGTCGCCGA AAAATATTCA GCTGTTAAAG
AATATTTCTG GGCTACTCAA TTTAAAGGTT AATGCCAGCA TTACGCCGCT AGCGGCCTGG
CACAACCCAC AGAAAGCCCC CAAGATTCTA TTTCATTTCC TCAAAGACGT TCACGGCGAA
CTCGGTCAGA TAGATCCTGA GCTCTTGTCG GCAGGCAAAC ATATCGCCAT CTGCGAAAAC
CTCTCGATGG ATGATGAGCT AACCCTGATA AAACATGGGT TTAGTGGTGC AACCAAGGCG
TGCAGCCCTG CACATGCCAT CATGCAAATG CTCGACAATG TACTCGAGGG CAACCTGTTT
TTTAGCCTGA GCGCCCTGTC GCACTATATT CAGACACAAC AAAAACCGGC TAAAGCCTCA
GAGCAACATG CACTGTTTCA AGGGATCACC AAGAAAGAGA AAGAGGTGCT CTCTTTTATC
TGTAAAGGCC TGAGTAACTC AGAAGCCGCA AATAAAATGA ACGTTTCAAT AAATACCATC
AAGATGCATT TACAAAACAT TTACAAAAAA ACCGATTGTA AGAGCCGAGG ACAACTCCTG
GTTAAATATA ATCAGTTATA G
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| Protein sequence | MYNGELFTLS RSPKNIQLLK NISGLLNLKV NASITPLAAW HNPQKAPKIL FHFLKDVHGE
LGQIDPELLS AGKHIAICEN LSMDDELTLI KHGFSGATKA CSPAHAIMQM LDNVLEGNLF
FSLSALSHYI QTQQKPAKAS EQHALFQGIT KKEKEVLSFI CKGLSNSEAA NKMNVSINTI
KMHLQNIYKK TDCKSRGQLL VKYNQL
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