Gene PA14_41810 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_41810 
Symbol 
ID4382963 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp3733152 
End bp3735857 
Gene Length2706 bp 
Protein Length901 aa 
Translation table11 
GC content66% 
IMG OID639325921 
Productputative transcriptional regulator 
Protein accessionYP_791486 
Protein GI116049709 
COG category[K] Transcription 
COG ID[COG2909] ATP-dependent transcriptional regulator 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones81 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATGCAG TACAGGATCC AGCAGCCGGC AGCCTTTCGC GCTCCAGAAT AGTGCCGCCT 
CAGGTGCCAG CCGAATATTC TCTTCGCCCC GCGATCCGCA ACCTGCTGGA TCGCAATCCC
CATTCACGCG TTCTGATGTT TTCCGCACCT GCCGGCTTCG GCAAGACCTG CGCGCTCGCC
GCCCTGGCCA GGGAGCGCAC TGTAGCAGAC CAGGCGGTGG CCTGGCTGTC GCTGGCCGAA
GAAGACGACG ACCCCGCCCG TTTCTGCCGG CAGCTGATCG AGGCGTTGGG CGAAGCCGTG
CCGCAGCTTG GCGACGACGC CCAGACCTAC CTGCAGAACA CCATGCGGGT CCCGGTGGTG
GCGGTGATCG AAAGCCTGCT CGGCGATCTC GATCGCTATG CGCGGCCGTT GCTGCTGGTG
CTGGACGACC TGCACCTGGT TAGCAACCCG GACATCTTCA CCGGCCTCAA CCGCCTGGTG
CAGTACGCAC CGCCCGGGCT GGTCCTGGCC CTGGGCACGC GTTCGCAGCC GGCGCTGAGC
CTGGCTACCT GGCGGGCCAA GGGACTGTTG CTGGAAATCG GCCTCGAGGA GCTGCGCCTC
GGCTTCGAGG AAACCCGCGA ATACCTCGAA CGCAGCGGTC TCTATCTGGA CGAGCCCTGC
CTGAAGGCGC TCTATGGCCA GACCGAAGGC TGGGTGGTGG GCGTGCATCT CGTCAGCCTG
TGGCTGCGCC AGCAACCGCA GGTGCAGGAA ATGGCCCTGC TCGACGGCGA CAAGCAGGCG
GTCAGCGCCT ATCTGCTGGC GGCGGTCTTC GAACGCTTGC CTGGCGACCT GCAGGAAGCG
CTGCTGGCCC TTGGCGTTGC CAGCCAATTG AGCGGCGACC TGGCCAACGC CCTGACCGGG
CGCCAGGACG GCCAGGCGCT GCTGGAGCGC CTGGAGTCCA TGCAATTGTT CCTCCTGCCG
CTGGATCGCG AACGCCAGTG GTATCGCTTC CACCTGCTGT TCGCCGACTT CCTCCGCAAC
CGCCTGCGCG ACTCCGATCC GGACCGTTTC AAGCAACTGC ATTTCAACGC CAGCCTGTGG
TTCACCAACC ACCACATGCC GACGTTCGCC ATCGAGCATG CCTGTGCGGC GGAAGACCCG
GAGATGATCG CCGCGCTGGT CGACGGATGC GGACTGGAGC TGATCAACCG CGGCCAGCTC
AGCCTGATCT ACCGTTGGCG CAAGCATGTG CCGGACGAAA TCGCCGAGCG CTATCCGATC
CTGGTCCTTA CCGATGTCTG GTCGCGGGCC AGCGACCTCA GCCTGGGCGA GGCCAACCGG
ATCATCGACG AACTGCTGGC GCGCTGGGGG GAGAGCCGCG GCGACGGGCC GATGGGCGAC
CAGTACCTCT CCGCGCTGGC GGTGAAGGCG GTGGTGGCGT TGCAGAAGGA CGATCTGGAA
CTGTGCATCG CCCTGGCTCG CCGGGTCGAG GTCCAGCTCG GGCAGAACGC TGCCTTCCTC
GAAGTGGCGG TGTTGATCAC CGCCGCGCTG GCCCAGGTGG TCCGTGGCCA GGGCGACCAG
GCGCGGCGCC TGCTGGGATT GGCGCAGCAG CGCAATCATT TCCTCGAAGG GCGCTACCTG
GACATGCAAC TGGCCAACGT CGAGGTGATC CTCGCACTTG AGCAGGGCCA GGTGAAGCAG
GCGCAACTGC TCATCGAGCG GCTCCGCCAG CGTGCCCGGC CGCTGTTCGA GAAGTCCAGG
AGCGCGCTGG CGCTGCCGAC CATCACCGAG GCCCTGACCG CCTACTACAG GATCGAGCTG
GACGGGCTGG AAGAGCGCCT GGGCTGGGCG CTCGGGCATG TGGATGTGAT CAATCCGATC
GATTTCTATG CCCAGGGGCA GATCTGCCTG GCGCGCACCC AGCGCCTGCT GGGACGGCCG
AAGGAGGCGC TGGCCAGCCT GGCGGCGATG CAGGCCCTGG CCTCGCGCAA TCAGTCGTGG
CGCTTCTTCG CCCAGGCCAT GGCCGAAGAG ATCAACCTGA TCCTCCAGGA CAGCGGCCCC
GACCGCCTGA AGCGCGCCGA GCAGCGGTTG AAGAGCGTGG ACTGGAACAA GATGGCGGCA
CACTACCGCA ACATGGCCTT CAACCCGGTC AACTGGTCGC TGGGCGTGAG CCGCGTGCGC
CTGTTGCAGG GGCGAGGACA TTTCAGCGAG GCGCTGCACG AGATCACTCA GTTGCGCGGC
ACCTTGCAGC CCGGTTGGCA CGGCCTGCAG CGCCTGCGCC TGGATATCCT GGCGGCGCTC
AGCTATCAGC GCCTGGGCTA CCAGGAACGG GCCAACAGCC TGCTCGGCGA ATGCCTGATC
AATGCCGAAC GGGAAGGGGT GCGCAGCCTC TTCATCGAGG AAGGCGACGG CATTCGCCAG
TTGCTCCAGC AACTCGAATC CACCGAGCGC CAGCCGGCGC TACAGACCTT CATTCGCGGC
CTGCTCGGCA TCTGGCCCGG GCAGGGCGTG CGCAAGCCCC AGGATGCGCT CGAGGAAGGC
CTGACGGAGC GCGAGCGCGA AGTGGTCTGC CTGGCCGCAC AGGGCCTATC CAACGAAGAA
ATCGGCCAGC GCCTGTCGCT GGCCCTGGGG ACCGTCAAAT GGCATCTGCA CAACATCTAC
GAAAAGCTCA AGGTGCGCAA TCGCACCCAG GCGATCCGGC GAGCCCGCGA GCTGAGCCTG
CTCTGA
 
Protein sequence
MDAVQDPAAG SLSRSRIVPP QVPAEYSLRP AIRNLLDRNP HSRVLMFSAP AGFGKTCALA 
ALARERTVAD QAVAWLSLAE EDDDPARFCR QLIEALGEAV PQLGDDAQTY LQNTMRVPVV
AVIESLLGDL DRYARPLLLV LDDLHLVSNP DIFTGLNRLV QYAPPGLVLA LGTRSQPALS
LATWRAKGLL LEIGLEELRL GFEETREYLE RSGLYLDEPC LKALYGQTEG WVVGVHLVSL
WLRQQPQVQE MALLDGDKQA VSAYLLAAVF ERLPGDLQEA LLALGVASQL SGDLANALTG
RQDGQALLER LESMQLFLLP LDRERQWYRF HLLFADFLRN RLRDSDPDRF KQLHFNASLW
FTNHHMPTFA IEHACAAEDP EMIAALVDGC GLELINRGQL SLIYRWRKHV PDEIAERYPI
LVLTDVWSRA SDLSLGEANR IIDELLARWG ESRGDGPMGD QYLSALAVKA VVALQKDDLE
LCIALARRVE VQLGQNAAFL EVAVLITAAL AQVVRGQGDQ ARRLLGLAQQ RNHFLEGRYL
DMQLANVEVI LALEQGQVKQ AQLLIERLRQ RARPLFEKSR SALALPTITE ALTAYYRIEL
DGLEERLGWA LGHVDVINPI DFYAQGQICL ARTQRLLGRP KEALASLAAM QALASRNQSW
RFFAQAMAEE INLILQDSGP DRLKRAEQRL KSVDWNKMAA HYRNMAFNPV NWSLGVSRVR
LLQGRGHFSE ALHEITQLRG TLQPGWHGLQ RLRLDILAAL SYQRLGYQER ANSLLGECLI
NAEREGVRSL FIEEGDGIRQ LLQQLESTER QPALQTFIRG LLGIWPGQGV RKPQDALEEG
LTEREREVVC LAAQGLSNEE IGQRLSLALG TVKWHLHNIY EKLKVRNRTQ AIRRARELSL
L