More than 300 homologs were found in PanDaTox collection
for query gene Rsph17025_3651 on replicon NC_009429
Organism: Rhodobacter sphaeroides ATCC 17025



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007488  RSP_3941  ABC sugar transporter, periplasmic ligand binding protein  90.02 
 
 
436 aa  755    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.487085  n/a   
 
 
-
 
NC_009429  Rsph17025_3651  hypothetical protein  100 
 
 
437 aa  890    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.943877  normal  0.0762923 
 
 
-
 
NC_013595  Sros_0296  hypothetical protein  56.11 
 
 
439 aa  464  1e-129  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_27700  ABC-type sugar transport system, periplasmic component  33.18 
 
 
426 aa  254  3e-66  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1619  putative sugar-binding lipoprotein  27.87 
 
 
434 aa  137  5e-31  Thermobifida fusca YX  Bacteria  normal  0.195944  n/a   
 
 
-
 
NC_013526  Tter_2659  extracellular solute-binding protein family 1  26.77 
 
 
495 aa  132  9e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0361435  n/a   
 
 
-
 
NC_009636  Smed_2950  extracellular solute-binding protein  26.87 
 
 
435 aa  131  2.0000000000000002e-29  Sinorhizobium medicae WSM419  Bacteria  normal  0.110397  normal 
 
 
-
 
NC_013411  GYMC61_2716  extracellular solute-binding protein family 1  25.72 
 
 
441 aa  125  1e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014165  Tbis_3251  extracellular solute-binding protein family 1  27.44 
 
 
427 aa  124  2e-27  Thermobispora bispora DSM 43833  Bacteria  normal  0.829082  normal 
 
 
-
 
NC_012850  Rleg_1866  extracellular solute-binding protein family 1  27.4 
 
 
434 aa  124  5e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0944  extracellular solute-binding protein  26.22 
 
 
422 aa  122  1.9999999999999998e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.544942  normal 
 
 
-
 
NC_011898  Ccel_0200  extracellular solute-binding protein family 1  25 
 
 
441 aa  120  6e-26  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3052  extracellular solute-binding protein family 1  28.89 
 
 
427 aa  119  9.999999999999999e-26  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.854825  normal  0.208902 
 
 
-
 
NC_009485  BBta_3985  putative ABC sugar transporter (substrate binding protein)  26.3 
 
 
419 aa  116  8.999999999999998e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0614  extracellular solute-binding protein family 1  24.86 
 
 
435 aa  115  1.0000000000000001e-24  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1685  extracellular solute-binding protein family 1  25.99 
 
 
434 aa  114  3e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2762  extracellular solute-binding protein  25.13 
 
 
431 aa  114  3e-24  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2345  extracellular solute-binding protein family 1  25.74 
 
 
424 aa  112  1.0000000000000001e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.822896  normal  0.413258 
 
 
-
 
NC_009620  Smed_4017  extracellular solute-binding protein  29.05 
 
 
435 aa  110  5e-23  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3587  extracellular solute-binding protein family 1  27.09 
 
 
441 aa  110  7.000000000000001e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.935518  normal  0.988969 
 
 
-
 
NC_013131  Caci_0477  extracellular solute-binding protein family 1  27.5 
 
 
432 aa  107  3e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.838392  normal 
 
 
-
 
NC_014151  Cfla_3054  extracellular solute-binding protein family 1  25.32 
 
 
429 aa  107  3e-22  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.0183103 
 
 
-
 
NC_008010  Dgeo_2696  extracellular solute-binding protein  22.67 
 
 
420 aa  105  2e-21  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.240659  n/a   
 
 
-
 
NC_008578  Acel_2049  extracellular solute-binding protein  25.92 
 
 
435 aa  105  2e-21  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20520  extracellular solute-binding protein family 1  25.21 
 
 
417 aa  105  2e-21  Halothermothrix orenii H 168  Bacteria  normal  0.561553  n/a   
 
 
-
 
NC_011988  Avi_5736  ABC transporter, substrate-binding protein  25.53 
 
 
410 aa  101  2e-20  Agrobacterium vitis S4  Bacteria  normal  0.214535  n/a   
 
 
-
 
NC_011898  Ccel_1025  extracellular solute-binding protein family 1  23.79 
 
 
444 aa  100  7e-20  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.00000399953  n/a   
 
 
-
 
NC_011898  Ccel_1133  extracellular solute-binding protein family 1  25.2 
 
 
451 aa  99.8  8e-20  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1874  MalE-type ABC sugar transport system periplasmic component  28.5 
 
 
427 aa  99.8  8e-20  Bifidobacterium longum DJO10A  Bacteria  normal  0.0756635  n/a   
 
 
-
 
NC_012669  Bcav_2719  extracellular solute-binding protein family 1  24.3 
 
 
434 aa  95.5  2e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.233137 
 
 
-
 
NC_013521  Sked_11540  ABC-type sugar transport system, periplasmic component  24.15 
 
 
428 aa  92.8  1e-17  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0159385 
 
 
-
 
NC_009718  Fnod_0626  extracellular solute-binding protein  24.45 
 
 
408 aa  92.8  1e-17  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.000000000892518  n/a   
 
 
-
 
NC_008541  Arth_0090  extracellular solute-binding protein  26.35 
 
 
441 aa  91.7  2e-17  Arthrobacter sp. FB24  Bacteria  normal  0.214251  n/a   
 
 
-
 
NC_013739  Cwoe_0374  extracellular solute-binding protein family 1  26.2 
 
 
458 aa  89.7  8e-17  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0240532 
 
 
-
 
NC_014151  Cfla_1126  extracellular solute-binding protein family 1  24.2 
 
 
433 aa  88.6  2e-16  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.162135  hitchhiker  0.000581091 
 
 
-
 
NC_010001  Cphy_3409  extracellular solute-binding protein  25.4 
 
 
451 aa  87.4  4e-16  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000000553575  n/a   
 
 
-
 
NC_009654  Mmwyl1_2016  extracellular solute-binding protein  26.52 
 
 
408 aa  87.4  4e-16  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00148299  normal 
 
 
-
 
NC_008261  CPF_0556  ABC transporter, solute-binding protein  25 
 
 
461 aa  87  7e-16  Clostridium perfringens ATCC 13124  Bacteria  normal  0.526712  n/a   
 
 
-
 
NC_011898  Ccel_0998  extracellular solute-binding protein family 1  27.37 
 
 
451 aa  86.3  9e-16  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_1999  extracellular solute-binding protein family 1  24.31 
 
 
468 aa  86.7  9e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2008  ABC transporter extracellular solute-binding protein  25.26 
 
 
408 aa  85.1  0.000000000000002  Psychromonas ingrahamii 37  Bacteria  normal  0.247518  normal 
 
 
-
 
NC_013174  Jden_2072  extracellular solute-binding protein family 1  25.51 
 
 
431 aa  85.5  0.000000000000002  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.0000000238529  normal 
 
 
-
 
NC_013172  Bfae_01550  ABC-type sugar transport system, periplasmic component  26.55 
 
 
438 aa  85.5  0.000000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2818  carbohydrate ABC transporter periplasmic binding protein  25.17 
 
 
399 aa  84.7  0.000000000000003  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0069  extracellular solute-binding protein family 1  25.99 
 
 
448 aa  84.7  0.000000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A1184  ABC transporter, substrate-binding protein  25.17 
 
 
413 aa  84.3  0.000000000000004  Burkholderia pseudomallei 1710b  Bacteria  normal  0.186568  n/a   
 
 
-
 
NC_014212  Mesil_2391  extracellular solute-binding protein family 1  23.08 
 
 
422 aa  84.3  0.000000000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  0.436445  normal 
 
 
-
 
NC_013595  Sros_8236  ABC-type sugar transport system periplasmic component-like protein  26.59 
 
 
434 aa  83.2  0.000000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.953199  normal  0.764848 
 
 
-
 
NC_013411  GYMC61_3304  extracellular solute-binding protein family 1  27.93 
 
 
431 aa  83.2  0.000000000000009  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0540  ABC transporter, substrate-binding protein  24.57 
 
 
461 aa  82.8  0.00000000000001  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3573  extracellular solute-binding protein family 1  22.99 
 
 
441 aa  82.4  0.00000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.862573  normal  0.0197328 
 
 
-
 
NC_013093  Amir_2404  extracellular solute-binding protein family 1  23.74 
 
 
424 aa  82  0.00000000000002  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000132449  n/a   
 
 
-
 
NC_009664  Krad_0972  extracellular solute-binding protein family 1  23.87 
 
 
442 aa  81.3  0.00000000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0353052 
 
 
-
 
NC_010001  Cphy_1529  extracellular solute-binding protein  24.45 
 
 
439 aa  81.6  0.00000000000003  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1105  extracellular solute-binding protein family 1  24.54 
 
 
442 aa  80.5  0.00000000000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.314126  normal  0.258829 
 
 
-
 
NC_011898  Ccel_0996  extracellular solute-binding protein family 1  25.83 
 
 
455 aa  79.3  0.0000000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4662  extracellular solute-binding protein family 1  26.73 
 
 
417 aa  79  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.917353 
 
 
-
 
NC_012669  Bcav_0434  extracellular solute-binding protein family 1  25.17 
 
 
444 aa  79  0.0000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.205913  normal 
 
 
-
 
NC_013530  Xcel_0185  extracellular solute-binding protein family 1  24.38 
 
 
436 aa  78.6  0.0000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.515223  n/a   
 
 
-
 
NC_013947  Snas_3251  extracellular solute-binding protein family 1  23.1 
 
 
428 aa  79  0.0000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.292164  normal  0.0559218 
 
 
-
 
NC_012848  Rleg_4751  extracellular solute-binding protein family 1  26.4 
 
 
417 aa  78.2  0.0000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.137656  normal  0.378465 
 
 
-
 
NC_013595  Sros_3339  Maltose-binding periplasmic protein/domains- like protein  26.95 
 
 
431 aa  77.4  0.0000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.202326 
 
 
-
 
NC_013525  Tter_1291  extracellular solute-binding protein family 1  29.89 
 
 
470 aa  77  0.0000000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013530  Xcel_2754  extracellular solute-binding protein family 1  23.1 
 
 
443 aa  76.3  0.0000000000009  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011881  Achl_4612  extracellular solute-binding protein family 1  26.49 
 
 
437 aa  75.5  0.000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008578  Acel_0434  extracellular solute-binding protein  24.54 
 
 
452 aa  75.1  0.000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.396307 
 
 
-
 
NC_012669  Bcav_3613  extracellular solute-binding protein family 1  26.1 
 
 
429 aa  75.5  0.000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.249837  normal  0.747368 
 
 
-
 
NC_013172  Bfae_00840  ABC-type sugar transport system, periplasmic component  25.22 
 
 
451 aa  74.3  0.000000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4057  extracellular solute-binding protein  24.64 
 
 
410 aa  74.3  0.000000000004  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_13140  extracellular solute-binding protein family 1  21.67 
 
 
424 aa  74.3  0.000000000004  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1306  extracellular solute-binding protein family 1  23.98 
 
 
445 aa  73.9  0.000000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0598  extracellular solute-binding protein family 1  23.18 
 
 
446 aa  73.9  0.000000000006  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.764573  n/a   
 
 
-
 
NC_009831  Ssed_1010  ABC-type sugar transport system, periplasmic component  20.42 
 
 
380 aa  73.2  0.000000000009  Shewanella sediminis HAW-EB3  Bacteria  normal  0.283496  normal 
 
 
-
 
NC_012669  Bcav_2590  extracellular solute-binding protein family 1  23.88 
 
 
464 aa  72.4  0.00000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_3246  extracellular solute-binding protein family 1  24.31 
 
 
443 aa  72.4  0.00000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0420  ABC sugar transporter, periplasmic ligand binding protein  24.8 
 
 
410 aa  72  0.00000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_7208  extracellular solute-binding protein family 1  25 
 
 
410 aa  72.4  0.00000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_31540  ABC-type sugar transport system, periplasmic component  27.27 
 
 
458 aa  71.6  0.00000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.197851  normal 
 
 
-
 
NC_011368  Rleg2_5608  extracellular solute-binding protein family 1  26.35 
 
 
427 aa  72  0.00000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.959607  normal 
 
 
-
 
NC_012669  Bcav_2703  extracellular solute-binding protein family 1  29.38 
 
 
423 aa  71.2  0.00000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.830349  normal  0.531916 
 
 
-
 
NC_012793  GWCH70_3155  extracellular solute-binding protein family 1  25.14 
 
 
434 aa  71.6  0.00000000003  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3483  extracellular solute-binding protein  23.78 
 
 
417 aa  70.9  0.00000000004  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_23430  ABC-type sugar transport system, periplasmic component  23.32 
 
 
435 aa  71.2  0.00000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.969599  normal 
 
 
-
 
NC_013159  Svir_11620  ABC-type sugar transport system, periplasmic component  24.48 
 
 
426 aa  70.5  0.00000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2572  extracellular solute-binding protein  21.98 
 
 
414 aa  70.5  0.00000000006  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1248  extracellular solute-binding protein family 1  23.06 
 
 
414 aa  69.7  0.00000000009  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.494424  normal  0.639356 
 
 
-
 
NC_007802  Jann_3838  extracellular solute-binding protein  24.69 
 
 
420 aa  69.3  0.0000000001  Jannaschia sp. CCS1  Bacteria  normal  0.754768  normal 
 
 
-
 
NC_008698  Tpen_1588  extracellular solute-binding protein  23.99 
 
 
452 aa  69.3  0.0000000001  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1218  extracellular solute-binding protein family 1  23.3 
 
 
444 aa  68.6  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7922  extracellular solute-binding protein family 1  22.58 
 
 
445 aa  68.6  0.0000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  27.53 
 
 
411 aa  68.6  0.0000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5441  extracellular solute-binding protein family 1  24.76 
 
 
452 aa  68.6  0.0000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3534  extracellular solute-binding protein family 1  25.09 
 
 
445 aa  67.4  0.0000000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.582574 
 
 
-
 
NC_008391  Bamb_4932  extracellular solute-binding protein  23.63 
 
 
419 aa  67.4  0.0000000005  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0556288 
 
 
-
 
NC_011661  Dtur_1808  extracellular solute-binding protein family 1  26.67 
 
 
414 aa  67  0.0000000006  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_5201  extracellular solute-binding protein  24.13 
 
 
420 aa  66.6  0.0000000009  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4577  extracellular solute-binding protein  24.13 
 
 
419 aa  66.2  0.0000000009  Burkholderia cenocepacia MC0-3  Bacteria  normal  hitchhiker  0.00216886 
 
 
-
 
NC_008543  Bcen2424_5658  extracellular solute-binding protein  24.13 
 
 
420 aa  66.6  0.0000000009  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0866592  normal  0.356633 
 
 
-
 
NC_013093  Amir_0616  extracellular solute-binding protein family 1  26.13 
 
 
432 aa  66.2  0.000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0168  extracellular solute-binding protein family 1  27.94 
 
 
412 aa  65.9  0.000000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
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