| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_2072 |
|---|
| Symbol | |
|---|
| ID | 8381231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 2264103 |
|---|
| End bp | 2265398 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645004825 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_003162013 |
|---|
| Protein GI | 256833286 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000238529 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAACA CGAAAACCAT GCGGTTCCTT GCGGCCGCAG CAGCGATCTC CATGCTCGCA
ACCGCCTGTT CAGGTGGCAG CGACGAGGAG AACACAAACG CCGATGGTGA CACCGTCATC
ACCTGGTGGC ACAACTCCAA CACCGGTAGT GGTAAGGACT ACTACGACCA GATCGCGGCA
GACTTCGAAG CAGCCAACGA AGGCGTCGAG GTCAAGGTTG AAGCACTTCA ACACGAAGAC
ATGACCACCA AGCTGGAAGC AGCCTTCCAG TCCGGTGAAA TGCCCGACAT CTACATGGAA
CGTGGTGGTG GTGAACTCGC GGACCACGTG GAAGCAGGCC TGACCCGCGA CCTCACCGAA
GATGCTGCCG GAACAATCGC CAAGCTCGGC GGTAACGTCG GTGGTTGGAC CGTGGATGAC
CGCGTCTACA GTTTGCCTTT CTCCATTGGT GTTGTTGGTT TCTGGTACAA CAAAGCTCTC
TTTGAGCAAG CAGGCATTGA GTCAGCGCCG ACCACCATGG CCGAGCTGAA TGACGCTGTT
CAGAAGCTCA AGGACGCAGG CATCGAGCCC ATCTCTGTTG GTGCCGGTGA CAAGTGGCCA
GCAGCTCACT ACTGGTACTA CTTCGCACTG CGTCAGTGCT CGCAGGACGT TCTTCAGTCC
GCTGTTGTCT CTCTTGACTT CCAAGACGAA TGCTTCGTTA AGGCTGGAGA GTCGCTCGAA
GACTTGGTGG CAACTGAGCC CTTCAACGCT GGGTTCCTCC AGACTCCTGC ACAGTCCGGT
CCCACCTCCG CATCTGGTCT CCTCGCTACC GACAAGGTCG CCATGGAACT TGCAGGGCAC
TGGGAACCAG GCGTGATGCA GGGACTCACC GAGGACGAGC AAGGTCTTGG TGAAGACACC
GGATGGTTCC CATTCCCCGC TGTTGAAGGC GGAGCTGGTG ACCCAGCCGC GCAGCTCGGT
GGTGGTGACG CATGGGCCGT TGCTCAGGAC GCACCAGATG TTGCCGTGGA CTTCGTGGAA
TATCTCCTCT CCGATGAGGT GCAAAAGGGC TTCGCAGAAC TCGACATGGG TCTGCCCACC
AACCCCACTG CTTCCCAGTA CGTTGCTGAC CCAGCACTTG CTGACCTCCT CGCAGTTCGT
GACGCATCAC CATTCATCCA GTTGTACTTC GACACCTCGT TCGGCACCTC CGTTGGTGGC
GCTATGAACG ACGAAATCGC ACTTGTGTTC GCCGGCCAAT CCTCTGCACA GGGCATTGTC
GACGCAACGC AGGCAGCTGC TGACCTGGAA AAGTGA
|
|---|
| Protein sequence | MRNTKTMRFL AAAAAISMLA TACSGGSDEE NTNADGDTVI TWWHNSNTGS GKDYYDQIAA
DFEAANEGVE VKVEALQHED MTTKLEAAFQ SGEMPDIYME RGGGELADHV EAGLTRDLTE
DAAGTIAKLG GNVGGWTVDD RVYSLPFSIG VVGFWYNKAL FEQAGIESAP TTMAELNDAV
QKLKDAGIEP ISVGAGDKWP AAHYWYYFAL RQCSQDVLQS AVVSLDFQDE CFVKAGESLE
DLVATEPFNA GFLQTPAQSG PTSASGLLAT DKVAMELAGH WEPGVMQGLT EDEQGLGEDT
GWFPFPAVEG GAGDPAAQLG GGDAWAVAQD APDVAVDFVE YLLSDEVQKG FAELDMGLPT
NPTASQYVAD PALADLLAVR DASPFIQLYF DTSFGTSVGG AMNDEIALVF AGQSSAQGIV
DATQAAADLE K
|
|---|
| |