| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1529 |
|---|
| Symbol | |
|---|
| ID | 5744351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 1878477 |
|---|
| End bp | 1879796 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641292631 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001558642 |
|---|
| Protein GI | 160879674 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAGA GGAAAATATC AGCACTAGTT CTTGTCGCAG CAATGACTTT TAGTTTACTA
GCAGGATGTG GGAATAAATC TTCGGATACT TCCACAAACA AAACGGATGG GGTAGTTGAA
ATTAAGTGGA TGTTTTGGGA TGACTTATCG GCCACTCAGG ACTTAATTAC AAAAGGATAC
GCACAAGTAA TTGAACGTTT TAATGAACAA TATGCTGGAA GATATCACTG TACACCGATT
ACTACAAATC TAGAGGAATA TGATACGAAA TTAAATGCAT TAGTTGCTGC CAATAATTGT
CCGGATGTAT TTATCTGTAA TCCAGGACCT AATTTAACGC AGTATGTGGA AAGTGGGACA
GCAGCGGATC TAACGGATAT TTTAAAGAAA AACGAATCAA AGTGGTATGA ATCCTTTACA
GAAGGTATTT TCGAGAGAAT GACATACGAT GGAAAAATTT ATGCAGTTCC AACAAACTTT
GCAGCAGCTT TAGTTTTTTA TAATACAGAG ATATTTGGAA AAACAGGGGC TTCTGTTCCA
ACAACATTTA CGGAGTGGAT TGCTACCTGC AAAAAGATTC AAGATGCTGG ATACACACCA
ATTTCTTGCT CAGCTGGTAC CGCTTGGTGC TTATCGATGA TTGCAGGCTA TCTTTGTGAT
AGAGCTGGTG GACCAGATAA TTTAATTGGA GTAAATACGG GCACTTTAGA TTGGACGAGT
GAATCTTTTC TAAATGCTGG TGAAAAGTTA GTTGAATTAT CAAAGTATTT TCAAAAAACA
GCAGCAGGAG ATTCGAATGA TCAAGCAACT GCAGGTTTTT ATAACGGCGA AGCTGCCATG
TTAGTACAGG GATCTTGGGC AATTGGCCAG ATTAATGGTA ACAATCCTGA GATGGAGCCA
AAGTGTGGAG TATTTTCTTT CCCAGCAATC GAAGGTGGGG CTGATCCTAA TCGTATGATT
GTTAAAACGG ATAATCTGGT TATGAGTTCA AAAACGAAAA ATCAGGACGC TTGTATAGCT
CTTATGAAAT GTTTTACAGA CGAAACAGCA CAGAAGTATA CTGCCGAAGT TGGCGGAAAG
ATTCCAATTA TTAAGGTTGA TTTCGATAAA GAAAAAGCAC CAGCACAGCT TAGTTATGTT
ATGGATATCT TAACAAAATC GACTGGTACC CTTGGTTTTT ATAATGAATC TTTAGCATCT
GTAGAGGCAG GGGATACATT CGATAATTCT ATGGTTGACC TATTCCTCGG AAGTATTTCG
GTAAATGAAG CATTCCAAAA TGTTCAGGAT TTCTATAAAG AGCATGTATG GAAAAAGTAA
|
|---|
| Protein sequence | MLKRKISALV LVAAMTFSLL AGCGNKSSDT STNKTDGVVE IKWMFWDDLS ATQDLITKGY
AQVIERFNEQ YAGRYHCTPI TTNLEEYDTK LNALVAANNC PDVFICNPGP NLTQYVESGT
AADLTDILKK NESKWYESFT EGIFERMTYD GKIYAVPTNF AAALVFYNTE IFGKTGASVP
TTFTEWIATC KKIQDAGYTP ISCSAGTAWC LSMIAGYLCD RAGGPDNLIG VNTGTLDWTS
ESFLNAGEKL VELSKYFQKT AAGDSNDQAT AGFYNGEAAM LVQGSWAIGQ INGNNPEMEP
KCGVFSFPAI EGGADPNRMI VKTDNLVMSS KTKNQDACIA LMKCFTDETA QKYTAEVGGK
IPIIKVDFDK EKAPAQLSYV MDILTKSTGT LGFYNESLAS VEAGDTFDNS MVDLFLGSIS
VNEAFQNVQD FYKEHVWKK
|
|---|
| |