| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1010 |
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| Symbol | |
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| ID | 5609987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1200612 |
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| End bp | 1201754 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640931858 |
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| Product | ABC-type sugar transport system, periplasmic component |
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| Protein accession | YP_001472749 |
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| Protein GI | 157374149 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.283496 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTTTCTA GTGCCGACCA GAGAAGCACT TTTTTTAATA AGATTAAAGA GTTTGAGAAG
GAACATCCAG AAATTGAGGT TACGCGTAAA GAGATAGGAC AAGAAGCTTA TAAAGCAGCA
ATTGAAGGAT GGCTTCATTC CAAAAAATTC CACAGCGATG TCTTGTTTTG GTTTGCGGGA
GCCAAACTCG ATGAGTTTGT GTCAAAAGAA TGGGTAGAGC CGATTGACGA CATATGGAAA
AAACAAAATT GGGATGAAGA ATTTTCTAAA ACTTTCAAAA CCGCAGTTAC CACTCATGAT
AAAACCTATG GTCTCCCGAT ATCTTATTAT CAATGGGGAT TCTATTATCG GAAGTCGATT
TTTAGACAGC ATAATCTCCG GCCTCCTCAG AATTGGAAAG AGTTTATTCA AGTAGGAGAA
AGCCTGAAAG CGAATAATAT CGCTCCTATT GCGTTAGGTA CTAAGGACCC TTGGGCTGCC
GCAGGTTGGT TTGATTATTT GAACCTCCGC ATCAATGGTT TAGCCTTCCA CCAAAGCTTA
ATGAAAGGCA AAGTATCTTA TACCGACCCT CGCATAAAAG AGGTATTTCG ATATTGGAAA
GAATTGCTGG ACCATCAATT TTTCCTGGAG CCTCACAACA AGCTCGATTG GCGAAGTACC
CTACCATATA TTTATCGGGG TAAAGCCGGA ATGTTACTGA TGGGCAACTT CCTTGTACCT
CAGCTTCCTA AAAGTATAAG AGACGACATT GGTTTTTTTC GCTTTCCTCA GATCAAGTCA
GACCTTCCAT ACTATGAGGA AGCTCCTATG GATATTCTTA TCATTCCGCA TAATGCAAGA
AATAAGAAAA CAGCTAAACA ATTTCTGGCC TTTATGGGGA GGGCCGATAT TCAATGCGCG
ATGAATAATC AAATGGGAAT GATTTCTCCC AATCAAGCAG CTGAAAAAGG GAAGAACCAA
CTCATACAGG CGGGATACAA AATTCTTGAA GAGGCAGCTG GAATTACCCA TTTTTATGAT
AGGGATACGC CTTCAGATAT GTCTGCTCCG GGTATGGAAG CGATGATTCA ATTCTTAAAT
CAACCGATGA GTACTGAGGA AATACTGGAA AAATTGGATA AGGTAAGAAA ACAAGTATTC
TAG
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| Protein sequence | MVSSADQRST FFNKIKEFEK EHPEIEVTRK EIGQEAYKAA IEGWLHSKKF HSDVLFWFAG
AKLDEFVSKE WVEPIDDIWK KQNWDEEFSK TFKTAVTTHD KTYGLPISYY QWGFYYRKSI
FRQHNLRPPQ NWKEFIQVGE SLKANNIAPI ALGTKDPWAA AGWFDYLNLR INGLAFHQSL
MKGKVSYTDP RIKEVFRYWK ELLDHQFFLE PHNKLDWRST LPYIYRGKAG MLLMGNFLVP
QLPKSIRDDI GFFRFPQIKS DLPYYEEAPM DILIIPHNAR NKKTAKQFLA FMGRADIQCA
MNNQMGMISP NQAAEKGKNQ LIQAGYKILE EAAGITHFYD RDTPSDMSAP GMEAMIQFLN
QPMSTEEILE KLDKVRKQVF
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