280 homologs were found in PanDaTox collection
for query gene Bamb_1214 on replicon NC_008390
Organism: Burkholderia ambifaria AMMD



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008390  Bamb_1214  cyclic nucleotide-binding protein  100 
 
 
275 aa  563  1.0000000000000001e-159  Burkholderia ambifaria AMMD  Bacteria  normal  0.988172  n/a   
 
 
-
 
NC_010551  BamMC406_1241  cyclic nucleotide-binding protein  97.32 
 
 
224 aa  446  1.0000000000000001e-124  Burkholderia ambifaria MC40-6  Bacteria  normal  0.357414  normal 
 
 
-
 
NC_007509  Bcep18194_C6981  cyclic nucleotide-binding domain-containing protein  85.27 
 
 
224 aa  396  1e-109  Burkholderia sp. 383  Bacteria  normal  normal  0.691618 
 
 
-
 
NC_008463  PA14_27700  putative transcriptional regulator  44.55 
 
 
241 aa  160  2e-38  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0112492 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  27.35 
 
 
243 aa  78.6  0.0000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  30.19 
 
 
243 aa  71.2  0.00000000002  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  30.19 
 
 
232 aa  70.5  0.00000000003  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  30.9 
 
 
226 aa  69.7  0.00000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_008782  Ajs_1779  Crp/FNR family transcriptional regulator  29.8 
 
 
239 aa  68.2  0.0000000001  Acidovorax sp. JS42  Bacteria  normal  0.72161  normal 
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  27.66 
 
 
227 aa  67  0.0000000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_009636  Smed_0098  CRP/FNR family transcriptional regulator  27.89 
 
 
234 aa  67.4  0.0000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.2435  normal 
 
 
-
 
NC_008752  Aave_3075  Crp/FNR family transcriptional regulator  27.69 
 
 
239 aa  67.4  0.0000000003  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.193734 
 
 
-
 
NC_011992  Dtpsy_1943  transcriptional regulator, Crp/Fnr family  29.29 
 
 
239 aa  65.9  0.0000000007  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  26.55 
 
 
247 aa  65.5  0.0000000008  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  28.64 
 
 
224 aa  65.5  0.0000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  26.88 
 
 
226 aa  64.7  0.000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3326  Crp/FNR family transcriptional regulator  28.34 
 
 
239 aa  63.9  0.000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5713  transcriptional regulator  26.6 
 
 
224 aa  63.2  0.000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.590376  normal 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  26.88 
 
 
226 aa  63.2  0.000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  26.88 
 
 
224 aa  63.2  0.000000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  28.89 
 
 
237 aa  62.8  0.000000006  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  27.86 
 
 
228 aa  62.4  0.000000008  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  27.08 
 
 
228 aa  62.4  0.000000008  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_012791  Vapar_2630  transcriptional regulator, Crp/Fnr family  25.26 
 
 
239 aa  61.6  0.00000001  Variovorax paradoxus S110  Bacteria  decreased coverage  0.00642792  n/a   
 
 
-
 
NC_008786  Veis_4308  cyclic nucleotide-binding protein  26.6 
 
 
239 aa  62  0.00000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0411784  normal 
 
 
-
 
NC_007347  Reut_A0894  cyclic nucleotide-binding  29.67 
 
 
226 aa  61.2  0.00000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2959  Crp/FNR family transcriptional regulator  26.07 
 
 
241 aa  61.2  0.00000002  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  28.1 
 
 
223 aa  60.8  0.00000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  26.98 
 
 
230 aa  59.7  0.00000004  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  27.72 
 
 
225 aa  60.1  0.00000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  27.32 
 
 
230 aa  59.7  0.00000006  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  25.14 
 
 
229 aa  59.3  0.00000006  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  25.4 
 
 
229 aa  58.9  0.00000009  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  27.13 
 
 
225 aa  58.5  0.0000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_010002  Daci_3287  Crp/FNR family transcriptional regulator  26.63 
 
 
239 aa  57.4  0.0000002  Delftia acidovorans SPH-1  Bacteria  normal  0.370075  normal  0.683237 
 
 
-
 
NC_011830  Dhaf_1724  transcriptional regulator, Crp/Fnr family  22.28 
 
 
230 aa  57.8  0.0000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  23.11 
 
 
243 aa  57.8  0.0000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  27.17 
 
 
225 aa  58.2  0.0000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  23.08 
 
 
225 aa  57.4  0.0000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  25.22 
 
 
224 aa  57  0.0000003  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_009511  Swit_3029  CRP/FNR family transcriptional regulator  24.48 
 
 
228 aa  57.4  0.0000003  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6723  putative cyclic-AMP receptor-like protein  25 
 
 
235 aa  57  0.0000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.823634  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  24.15 
 
 
224 aa  56.2  0.0000006  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  28.14 
 
 
230 aa  55.8  0.0000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  25.85 
 
 
225 aa  55.5  0.0000008  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_008781  Pnap_1913  CRP/FNR family transcriptional regulator  27.78 
 
 
241 aa  55.8  0.0000008  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.205993  normal  0.953786 
 
 
-
 
NC_013093  Amir_3957  transcriptional regulator, Crp/Fnr family  28.89 
 
 
289 aa  55.5  0.0000009  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  27.84 
 
 
224 aa  55.1  0.000001  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_008009  Acid345_1498  Crp/FNR family transcriptional regulator  28 
 
 
239 aa  55.1  0.000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.163113  normal 
 
 
-
 
NC_011145  AnaeK_2607  cyclic nucleotide-binding protein  25.4 
 
 
215 aa  54.7  0.000001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0336  cyclic nucleotide-binding domain-containing protein  25.47 
 
 
223 aa  55.1  0.000001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0158598  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0465  transcriptional regulator, Crp/Fnr family  23.42 
 
 
223 aa  55.1  0.000001  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00000000196856  n/a   
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  26.04 
 
 
220 aa  53.9  0.000002  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_011138  MADE_01198  cyclic nucleotide-binding protein  26.11 
 
 
229 aa  54.3  0.000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2700  cyclic nucleotide-binding protein  25.67 
 
 
215 aa  54.3  0.000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  hitchhiker  0.00108848  n/a   
 
 
-
 
NC_007964  Nham_2535  cyclic nucleotide-binding domain-containing protein  23.9 
 
 
228 aa  54.3  0.000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  23.19 
 
 
246 aa  54.7  0.000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  25.81 
 
 
246 aa  54.7  0.000002  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  26.63 
 
 
236 aa  54.7  0.000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  23.19 
 
 
229 aa  54.7  0.000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  24.31 
 
 
231 aa  53.9  0.000003  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  25.91 
 
 
238 aa  53.9  0.000003  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_007760  Adeh_1256  cyclic nucleotide-binding domain-containing protein  25.67 
 
 
215 aa  53.1  0.000004  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  27.37 
 
 
225 aa  53.5  0.000004  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  25.13 
 
 
228 aa  53.1  0.000005  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  25.94 
 
 
240 aa  53.1  0.000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  23.45 
 
 
236 aa  53.1  0.000005  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_010676  Bphyt_6768  cyclic nucleotide-binding protein  22.7 
 
 
248 aa  53.1  0.000005  Burkholderia phytofirmans PsJN  Bacteria  normal  0.1826  normal  0.270362 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  25.67 
 
 
225 aa  52.8  0.000006  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  26.74 
 
 
218 aa  52.8  0.000006  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_007958  RPD_1723  cyclic nucleotide-binding  25.95 
 
 
228 aa  52.8  0.000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.637067  normal 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  23.45 
 
 
236 aa  52.8  0.000006  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  26.36 
 
 
227 aa  52.8  0.000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  26.74 
 
 
218 aa  52.8  0.000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  22.32 
 
 
225 aa  52.8  0.000007  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2608  CRP/FNR family transcriptional regulator  27.6 
 
 
239 aa  52.4  0.000008  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.700213  normal  0.0258786 
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  23.66 
 
 
230 aa  51.6  0.00001  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  28.27 
 
 
235 aa  51.6  0.00001  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  23.32 
 
 
226 aa  52  0.00001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0691  cyclic nucleotide-binding protein  25.24 
 
 
212 aa  51.6  0.00001  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1951  Crp/FNR family transcriptional regulator  25.4 
 
 
234 aa  51.6  0.00001  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.1084 
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  23.89 
 
 
227 aa  51.2  0.00002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  23.12 
 
 
231 aa  51.2  0.00002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_3715  cAMP-regulatory protein  26.57 
 
 
229 aa  51.2  0.00002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.088887  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  22.48 
 
 
225 aa  51.2  0.00002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_010086  Bmul_4311  cyclic nucleotide-binding protein  23.56 
 
 
285 aa  51.2  0.00002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0853188  normal  0.342841 
 
 
-
 
NC_006349  BMAA1395  cyclic nucleotide-binding domain-containing protein  24.4 
 
 
304 aa  50.4  0.00003  Burkholderia mallei ATCC 23344  Bacteria  normal  0.553188  n/a   
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  23.68 
 
 
254 aa  50.4  0.00003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_007952  Bxe_B2783  cyclic nucleotide-binding domain-containing protein  22.7 
 
 
248 aa  50.4  0.00003  Burkholderia xenovorans LB400  Bacteria  normal  0.778441  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  24.02 
 
 
219 aa  50.8  0.00003  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_011071  Smal_2229  transcriptional regulator, Crp/Fnr family  26.63 
 
 
258 aa  50.4  0.00003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.173815  normal 
 
 
-
 
NC_010002  Daci_4994  cyclic nucleotide-binding protein  25.65 
 
 
247 aa  50.1  0.00004  Delftia acidovorans SPH-1  Bacteria  normal  0.103725  normal 
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  25.81 
 
 
263 aa  50.1  0.00004  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  29.47 
 
 
298 aa  50.1  0.00004  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_008148  Rxyl_2796  Crp/FNR family transcriptional regulator  26.84 
 
 
250 aa  50.1  0.00004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  24.21 
 
 
230 aa  50.1  0.00004  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4909  transcriptional regulator, Crp/Fnr family  26.04 
 
 
221 aa  50.1  0.00004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.385812  n/a   
 
 
-
 
NC_008784  BMASAVP1_0510  cyclic nucleotide-binding domain-containing protein  24.4 
 
 
284 aa  50.1  0.00004  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0137  cyclic nucleotide-binding domain-containing protein  24.4 
 
 
284 aa  50.1  0.00004  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1475  cyclic nucleotide-binding protein  24.4 
 
 
284 aa  50.1  0.00004  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
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