More than 300 homologs were found in PanDaTox collection
for query gene Cpin_2103 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_2103  two component transcriptional regulator, LuxR family  100 
 
 
210 aa  429  1e-119  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  36.84 
 
 
206 aa  149  2e-35  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1987  two component LuxR family transcriptional regulator  35.89 
 
 
213 aa  142  4e-33  Flavobacterium johnsoniae UW101  Bacteria  normal  0.429674  n/a   
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  37.32 
 
 
206 aa  140  1.9999999999999998e-32  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  36.22 
 
 
216 aa  139  3e-32  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  37.32 
 
 
213 aa  137  1e-31  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010644  Emin_0306  two component LuxR family transcriptional regulator  38.21 
 
 
215 aa  136  2e-31  Elusimicrobium minutum Pei191  Bacteria  unclonable  0.000000000161342  hitchhiker  0.00000159266 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  36.97 
 
 
216 aa  135  6.0000000000000005e-31  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  36.06 
 
 
212 aa  134  8e-31  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  36.32 
 
 
213 aa  134  8e-31  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  35.41 
 
 
216 aa  134  8e-31  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  34.58 
 
 
221 aa  134  9e-31  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  35.12 
 
 
213 aa  134  9.999999999999999e-31  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  35.55 
 
 
214 aa  134  9.999999999999999e-31  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  35.12 
 
 
213 aa  134  9.999999999999999e-31  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  33.18 
 
 
228 aa  133  1.9999999999999998e-30  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  33.01 
 
 
222 aa  132  3e-30  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.764026 
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  36.02 
 
 
223 aa  132  5e-30  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  32.06 
 
 
220 aa  131  6.999999999999999e-30  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  33.49 
 
 
224 aa  131  7.999999999999999e-30  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  33.49 
 
 
219 aa  130  2.0000000000000002e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  35.1 
 
 
206 aa  129  4.0000000000000003e-29  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  34.12 
 
 
218 aa  129  4.0000000000000003e-29  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal 
 
 
-
 
NC_009832  Spro_3490  two component LuxR family transcriptional regulator  36.08 
 
 
210 aa  129  4.0000000000000003e-29  Serratia proteamaculans 568  Bacteria  normal  0.0559776  normal 
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  33.49 
 
 
219 aa  128  5.0000000000000004e-29  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_008255  CHU_1317  response regulator  33.64 
 
 
220 aa  128  6e-29  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  37.85 
 
 
216 aa  128  6e-29  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  33.49 
 
 
213 aa  128  7.000000000000001e-29  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0641  two component transcriptional regulator, LuxR family  33.49 
 
 
1648 aa  128  8.000000000000001e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  36.67 
 
 
227 aa  127  1.0000000000000001e-28  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0443  two component LuxR family transcriptional regulator  36.1 
 
 
213 aa  127  1.0000000000000001e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  35.71 
 
 
216 aa  127  1.0000000000000001e-28  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  32.39 
 
 
231 aa  126  2.0000000000000002e-28  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  34.12 
 
 
215 aa  126  3e-28  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  34.6 
 
 
213 aa  126  3e-28  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_014211  Ndas_4922  two component transcriptional regulator, LuxR family  31.9 
 
 
206 aa  126  3e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0302523  normal 
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  32.83 
 
 
213 aa  125  4.0000000000000003e-28  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  33.8 
 
 
217 aa  125  4.0000000000000003e-28  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  34.13 
 
 
221 aa  125  5e-28  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  34.76 
 
 
219 aa  125  5e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  33.33 
 
 
217 aa  125  5e-28  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5409  two component transcriptional regulator, LuxR family  31.51 
 
 
223 aa  125  6e-28  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00220575  normal 
 
 
-
 
NC_013739  Cwoe_1233  two component transcriptional regulator, LuxR family  33.33 
 
 
220 aa  124  7e-28  Conexibacter woesei DSM 14684  Bacteria  normal  0.681342  normal  0.792953 
 
 
-
 
NC_009952  Dshi_2345  two component transcriptional regulator  33.65 
 
 
220 aa  124  7e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.499423  normal  0.134206 
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  31.63 
 
 
221 aa  124  9e-28  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.133182 
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  34.45 
 
 
212 aa  124  9e-28  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  35.78 
 
 
218 aa  124  9e-28  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  36.06 
 
 
223 aa  124  1e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.658241 
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  32.35 
 
 
213 aa  124  1e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  34.17 
 
 
208 aa  124  1e-27  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1446  response regulator receiver protein  34.93 
 
 
209 aa  124  1e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0167897  normal  0.0778626 
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  32.32 
 
 
213 aa  124  1e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_012854  Rleg_6399  two component transcriptional regulator, LuxR family  35.55 
 
 
214 aa  124  1e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.139442 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  34.12 
 
 
242 aa  123  2e-27  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  33.01 
 
 
213 aa  123  2e-27  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0500394 
 
 
-
 
NC_008025  Dgeo_0315  two component LuxR family transcriptional regulator  36.97 
 
 
214 aa  123  2e-27  Deinococcus geothermalis DSM 11300  Bacteria  normal  hitchhiker  0.0084678 
 
 
-
 
NC_013730  Slin_0700  two component transcriptional regulator, LuxR family  30.18 
 
 
218 aa  122  3e-27  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00980919  normal  0.316207 
 
 
-
 
NC_013132  Cpin_4551  two component transcriptional regulator, LuxR family  32.38 
 
 
208 aa  122  3e-27  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.000124934  normal  0.0275678 
 
 
-
 
NC_011662  Tmz1t_1954  two component transcriptional regulator, LuxR family  31.25 
 
 
220 aa  122  3e-27  Thauera sp. MZ1T  Bacteria  normal  0.228638  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  35.27 
 
 
219 aa  122  5e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  31.63 
 
 
238 aa  122  5e-27  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.24 
 
 
225 aa  122  5e-27  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_009052  Sbal_1241  two component LuxR family transcriptional regulator  33.97 
 
 
216 aa  122  5e-27  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000399601  n/a   
 
 
-
 
NC_013131  Caci_7658  two component transcriptional regulator, LuxR family  29.63 
 
 
219 aa  121  6e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  32.88 
 
 
225 aa  121  6e-27  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  33.18 
 
 
224 aa  121  6e-27  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_011884  Cyan7425_3249  two component transcriptional regulator, LuxR family  33.67 
 
 
211 aa  121  7e-27  Cyanothece sp. PCC 7425  Bacteria  normal  0.414819  normal  0.558116 
 
 
-
 
NC_009665  Shew185_1285  two component LuxR family transcriptional regulator  33.97 
 
 
216 aa  121  7e-27  Shewanella baltica OS185  Bacteria  decreased coverage  0.000337392  n/a   
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  34.93 
 
 
215 aa  121  8e-27  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2794  nitrate/nitrite response regulator protein NarP  34.72 
 
 
209 aa  120  9.999999999999999e-27  Yersinia pestis Angola  Bacteria  normal  normal  0.0858473 
 
 
-
 
NC_013730  Slin_6527  two component transcriptional regulator, LuxR family  33.49 
 
 
215 aa  120  9.999999999999999e-27  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  34.76 
 
 
218 aa  120  9.999999999999999e-27  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1384  two component LuxR family transcriptional regulator  34.72 
 
 
209 aa  120  9.999999999999999e-27  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3070  two component transcriptional regulator, LuxR family  33.49 
 
 
216 aa  120  9.999999999999999e-27  Shewanella baltica OS223  Bacteria  decreased coverage  0.000689776  unclonable  0.00000000000283062 
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  30.05 
 
 
232 aa  120  9.999999999999999e-27  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  31.31 
 
 
250 aa  120  9.999999999999999e-27  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_013132  Cpin_2907  two component transcriptional regulator, LuxR family  28.77 
 
 
222 aa  120  1.9999999999999998e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0590247  normal 
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  32.38 
 
 
210 aa  120  1.9999999999999998e-26  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  34.29 
 
 
218 aa  120  1.9999999999999998e-26  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  34.29 
 
 
218 aa  120  1.9999999999999998e-26  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  32.84 
 
 
213 aa  120  1.9999999999999998e-26  Burkholderia phymatum STM815  Bacteria  normal  normal  0.53826 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  33.01 
 
 
213 aa  120  1.9999999999999998e-26  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  27.91 
 
 
225 aa  120  1.9999999999999998e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  32.23 
 
 
219 aa  120  1.9999999999999998e-26  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0121621 
 
 
-
 
NC_009997  Sbal195_1319  two component LuxR family transcriptional regulator  33.01 
 
 
216 aa  119  3e-26  Shewanella baltica OS195  Bacteria  normal  0.0542522  decreased coverage  0.000972679 
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  30.52 
 
 
232 aa  119  3e-26  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  30.33 
 
 
207 aa  119  3e-26  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  31.75 
 
 
207 aa  119  3e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_013061  Phep_2962  response regulator receiver  33.97 
 
 
206 aa  119  3.9999999999999996e-26  Pedobacter heparinus DSM 2366  Bacteria  normal  0.117851  normal 
 
 
-
 
NC_008751  Dvul_0670  two component LuxR family transcriptional regulator  32.86 
 
 
216 aa  119  3.9999999999999996e-26  Desulfovibrio vulgaris DP4  Bacteria  normal  0.267154  normal 
 
 
-
 
NC_009708  YpsIP31758_1270  nitrate/nitrite response regulator protein NarP  34.2 
 
 
209 aa  119  3.9999999999999996e-26  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.214676  n/a   
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  32.38 
 
 
210 aa  119  4.9999999999999996e-26  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5126  two component LuxR family transcriptional regulator  32.37 
 
 
209 aa  119  4.9999999999999996e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.135043  normal  0.384971 
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  32.7 
 
 
224 aa  118  4.9999999999999996e-26  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  33.82 
 
 
222 aa  118  4.9999999999999996e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_008463  PA14_07840  putative two-component response regulator  32.85 
 
 
210 aa  118  4.9999999999999996e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0171986 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  32.86 
 
 
206 aa  119  4.9999999999999996e-26  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  31.9 
 
 
212 aa  119  4.9999999999999996e-26  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0745  putative two-component response regulator  33.33 
 
 
210 aa  119  4.9999999999999996e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  0.536324  n/a   
 
 
-
 
NC_009801  EcE24377A_2492  transcriptional regulator NarP  35 
 
 
215 aa  118  6e-26  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>