| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1260 |
|---|
| Symbol | |
|---|
| ID | 3521261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 1292246 |
|---|
| End bp | 1292866 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637283724 |
|---|
| Product | putative nitrate/nitrite DNA-binding response regulator |
|---|
| Protein accession | YP_268003 |
|---|
| Protein GI | 71280792 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAAG TGCTATTAGT TGACGATCAT CCGCTTTTTA GAGAGGGACT GAAACATCGC
TTGAGTCTTG ATGACTGCAT AGAGGTTGTG GGTGAAGCTG AAAATGGCAA ACAAGCATTG
GAGCTTATTA AGAGTCTTGA TTTTGATATT GTTTTAATGG ATATCAATAT GCCTGAGATG
GATGGCATGT ATGTACTTGA ATTGATTAAA GAGCAAGATT TAGATTGCAA AGTGCTTATG
TTAAGTATGC ATGACAATAA AGAGTACATT TTAGGTGCTA TGCGTCATGG CGCCGATGGC
TATATTTTAA AAGACGTGCC AGGTGCTGAA TTAATAGAGG CCATTAAAAA AGTCATTTCA
GGTAAACATT ATTTCAGCTC AGAAGTTACC GAGATCCTGT CAAAAGAGCT CGCTGGAGAA
CAACGAGGTA TTGTTACCAG AAGAGAGCAA TTGGTATTAA GGCTGATTTC ACAGGGCTTG
AACAATAAGC GTATAGCGCA AGAATTAAAC GTGAGCGTGC GCACGGTTGA AACACATAAA
CGTAATATAA AACAAAAACT TGGTATCGAC TCAACGGTTG GTCTAATGCG TTACGCCATT
GATTATGGTT TAGATCGCTA G
|
|---|
| Protein sequence | MIKVLLVDDH PLFREGLKHR LSLDDCIEVV GEAENGKQAL ELIKSLDFDI VLMDINMPEM
DGMYVLELIK EQDLDCKVLM LSMHDNKEYI LGAMRHGADG YILKDVPGAE LIEAIKKVIS
GKHYFSSEVT EILSKELAGE QRGIVTRREQ LVLRLISQGL NNKRIAQELN VSVRTVETHK
RNIKQKLGID STVGLMRYAI DYGLDR
|
|---|
| |