| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0905 |
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| Symbol | |
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| ID | 5614208 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1081170 |
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| End bp | 1081790 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931753 |
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| Product | putative nitrate/nitrite DNA-binding response regulator |
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| Protein accession | YP_001472644 |
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| Protein GI | 157374044 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0826046 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000533581 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCCGCG TACTTTTGGT GGACGATCAT CCCCTGTTTC GGGAAGGGTT ACGGCATCGT
CTGGACCTTG ACTGCGACAT AGAGGTACAA GCTGAAGCAG ACAATGGCCT CCAGGCTCTG
GAGATCCTAA AGGATACACA GATCGATCTG GTGTTGATGG ATATTAATAT GCCACAAATG
GATGGCATGT ATCTGCTTGA GCTGATTAAG GAGCAGGAGA TGTCATGCAA GGTGGTGATG
TTGAGCATGC ATGACAACAA GGAATATATA GTGGCGGCAA TGCGCCACGG TGCCGATGGC
TATATTCTCA AGGATGTACC CGGTAAGGAA CTCATTGAAG CGATTAAAAA AGTTGCCGCC
GGTAAGCGCT ATTTCAGTGC AGATGTCATA GACACCCTGT CACAGGAGCT CGCCAGTGGC
AAACAAGTTC TGGTAACCCA GCGGGAACAG TTAGTTTTAC GCTTGATATC GCTGGGGATG
AATAATAAAC GCATTGCGCA GGAGATGAAT GTCAGTGTAC GCACGGTCGA GACCCATAAG
CGTAATATCA AACAGAAACT GGCTATAGAC TGTACGGCCG GCCTGGTGCG TTATGCCATA
GATCATGGCT TAGACAGGTA A
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| Protein sequence | MIRVLLVDDH PLFREGLRHR LDLDCDIEVQ AEADNGLQAL EILKDTQIDL VLMDINMPQM
DGMYLLELIK EQEMSCKVVM LSMHDNKEYI VAAMRHGADG YILKDVPGKE LIEAIKKVAA
GKRYFSADVI DTLSQELASG KQVLVTQREQ LVLRLISLGM NNKRIAQEMN VSVRTVETHK
RNIKQKLAID CTAGLVRYAI DHGLDR
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