More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_1864 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  100 
 
 
262 aa  523  1e-147  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  82.06 
 
 
262 aa  442  1e-123  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  81.3 
 
 
262 aa  438  9.999999999999999e-123  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  81.68 
 
 
262 aa  435  1e-121  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  79.15 
 
 
264 aa  424  1e-118  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  79.15 
 
 
264 aa  422  1e-117  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  72.52 
 
 
262 aa  395  1e-109  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  73.93 
 
 
260 aa  386  1e-106  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  76.34 
 
 
262 aa  383  1e-105  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  71.98 
 
 
260 aa  378  1e-104  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  66.02 
 
 
261 aa  355  2.9999999999999997e-97  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  64.59 
 
 
260 aa  342  4e-93  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3491  short-chain dehydrogenase/reductase SDR  63.71 
 
 
287 aa  328  6e-89  Dickeya zeae Ech1591  Bacteria  normal  0.210779  n/a   
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  57.31 
 
 
265 aa  266  2.9999999999999995e-70  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  56.92 
 
 
265 aa  259  3e-68  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  56.25 
 
 
264 aa  254  1.0000000000000001e-66  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  51.33 
 
 
267 aa  248  7e-65  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  49.42 
 
 
266 aa  247  1e-64  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  50.2 
 
 
257 aa  247  2e-64  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  53.1 
 
 
269 aa  244  8e-64  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  48.63 
 
 
266 aa  244  9.999999999999999e-64  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  48.64 
 
 
271 aa  240  1e-62  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  48.63 
 
 
281 aa  240  2e-62  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  48.63 
 
 
266 aa  240  2e-62  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  48.63 
 
 
281 aa  240  2e-62  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  49.41 
 
 
270 aa  239  2.9999999999999997e-62  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  48.24 
 
 
266 aa  239  2.9999999999999997e-62  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  49.02 
 
 
266 aa  238  6.999999999999999e-62  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  50.59 
 
 
266 aa  234  1.0000000000000001e-60  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  47.45 
 
 
266 aa  232  4.0000000000000004e-60  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  48.63 
 
 
270 aa  232  4.0000000000000004e-60  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  48.82 
 
 
271 aa  228  6e-59  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  47.88 
 
 
265 aa  226  2e-58  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  47.73 
 
 
266 aa  226  3e-58  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  48.05 
 
 
264 aa  225  5.0000000000000005e-58  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  46.67 
 
 
265 aa  224  1e-57  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  49.22 
 
 
262 aa  223  2e-57  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  44.92 
 
 
265 aa  221  9.999999999999999e-57  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  46.72 
 
 
264 aa  219  3.9999999999999997e-56  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  48.83 
 
 
262 aa  218  5e-56  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  49.61 
 
 
264 aa  218  6e-56  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  48.44 
 
 
263 aa  217  2e-55  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  46.09 
 
 
265 aa  216  2.9999999999999998e-55  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  46.21 
 
 
285 aa  214  9.999999999999999e-55  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  46.27 
 
 
270 aa  213  2.9999999999999995e-54  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  44.36 
 
 
269 aa  211  1e-53  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  45.11 
 
 
269 aa  208  8e-53  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  44.92 
 
 
269 aa  206  3e-52  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  46.56 
 
 
270 aa  205  7e-52  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  47.45 
 
 
271 aa  203  2e-51  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  42.8 
 
 
266 aa  202  4e-51  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2349  short-chain dehydrogenase/reductase SDR  45.28 
 
 
266 aa  202  6e-51  Polaromonas sp. JS666  Bacteria  normal  0.341044  normal 
 
 
-
 
NC_012792  Vapar_5551  short-chain dehydrogenase/reductase SDR  45.67 
 
 
266 aa  200  1.9999999999999998e-50  Variovorax paradoxus S110  Bacteria  normal  0.614615  n/a   
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  47.89 
 
 
269 aa  196  5.000000000000001e-49  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  43.31 
 
 
266 aa  192  5e-48  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  41.34 
 
 
269 aa  183  3e-45  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  37.8 
 
 
267 aa  167  2e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  39.37 
 
 
263 aa  166  2.9999999999999998e-40  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4444  short-chain dehydrogenase/reductase SDR  50.2 
 
 
264 aa  164  2.0000000000000002e-39  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.241971  normal 
 
 
-
 
NC_009621  Smed_5566  short-chain dehydrogenase/reductase SDR  43.08 
 
 
199 aa  157  2e-37  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0343056 
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  41.13 
 
 
296 aa  157  2e-37  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  39.22 
 
 
268 aa  152  5.9999999999999996e-36  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  38.84 
 
 
266 aa  145  4.0000000000000006e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  38.84 
 
 
266 aa  145  5e-34  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  44.28 
 
 
258 aa  144  2e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  38.67 
 
 
259 aa  144  2e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  36.82 
 
 
255 aa  141  9.999999999999999e-33  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  40.17 
 
 
259 aa  141  9.999999999999999e-33  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  38.74 
 
 
269 aa  141  9.999999999999999e-33  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  39.82 
 
 
253 aa  141  9.999999999999999e-33  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  38.05 
 
 
252 aa  140  3e-32  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  37.04 
 
 
283 aa  139  7e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  36.16 
 
 
262 aa  138  7e-32  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  37.28 
 
 
269 aa  138  7.999999999999999e-32  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  41.75 
 
 
263 aa  137  2e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  42.93 
 
 
255 aa  136  3.0000000000000003e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  38.39 
 
 
262 aa  136  3.0000000000000003e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  35.71 
 
 
258 aa  135  5e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_2122  short-chain dehydrogenase/reductase SDR  39.29 
 
 
249 aa  135  5e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.617745 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  38.33 
 
 
258 aa  135  8e-31  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  40.31 
 
 
257 aa  134  1.9999999999999998e-30  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  39.3 
 
 
262 aa  132  5e-30  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  39.3 
 
 
262 aa  132  5e-30  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  39.3 
 
 
262 aa  131  1.0000000000000001e-29  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_011059  Paes_0281  short-chain dehydrogenase/reductase SDR  33.04 
 
 
255 aa  130  2.0000000000000002e-29  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000634692  hitchhiker  0.00117931 
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  35.34 
 
 
262 aa  130  2.0000000000000002e-29  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  40.17 
 
 
267 aa  130  2.0000000000000002e-29  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0480  short-chain dehydrogenase/reductase SDR  37.33 
 
 
258 aa  129  4.0000000000000003e-29  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0491  short-chain dehydrogenase/reductase SDR  37.33 
 
 
258 aa  129  4.0000000000000003e-29  Mycobacterium sp. KMS  Bacteria  normal  normal  0.354983 
 
 
-
 
NC_009077  Mjls_0469  short-chain dehydrogenase/reductase SDR  37.78 
 
 
258 aa  129  4.0000000000000003e-29  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_1969  short chain dehydrogenase/reductase family oxidoreductase  35.84 
 
 
260 aa  129  5.0000000000000004e-29  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0351  short-chain dehydrogenase/reductase SDR  37.84 
 
 
291 aa  129  5.0000000000000004e-29  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  37.39 
 
 
258 aa  129  6e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  36.4 
 
 
258 aa  128  7.000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_013235  Namu_5163  short-chain dehydrogenase/reductase SDR  37.34 
 
 
258 aa  128  8.000000000000001e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6420  short-chain dehydrogenase/reductase SDR  40.18 
 
 
259 aa  128  8.000000000000001e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  41.45 
 
 
264 aa  127  2.0000000000000002e-28  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1004  short-chain dehydrogenase/reductase SDR  36.57 
 
 
276 aa  127  2.0000000000000002e-28  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.118299  decreased coverage  0.00158374 
 
 
-
 
NC_009664  Krad_2814  short-chain dehydrogenase/reductase SDR  42.11 
 
 
260 aa  127  2.0000000000000002e-28  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.563613  normal 
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  39.47 
 
 
264 aa  127  2.0000000000000002e-28  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
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